View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_34 (Length: 303)
Name: NF18380_low_34
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 963335 - 963146
Alignment:
| Q |
15 |
agaacctgtgtttgggagagactctaagtcctaaaacataagctagttttacataagctgaattccctcttgtaactgttttcacacaaccccttatcac |
114 |
Q |
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| T |
963335 |
agaacctgtgtttgggagagactctaagtcctaaaacataagctagttttacataagctgaattccctcttgtaactgttttcacacaaccccttatcac |
963236 |
T |
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| Q |
115 |
tccaacaacttctccttcttctccatattctgcaacctgtttggaacaaatattaccttgatcagtccatatatcaaactgtgaaactact |
205 |
Q |
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| T |
963235 |
tccagcaacttctccttcttcttcatattctgcaacctgtttggaacaaatattacattgattagtcca-atatcaaactgtgaaactact |
963146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 963056 - 962982
Alignment:
| Q |
214 |
tattcaacactaaaacataatgtcgcattaggtatacatcaatatagtgtgtcaactcttagtctacacatttat |
288 |
Q |
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| T |
963056 |
tattcaacactaaaacataatgtcgcattagatatacatcaatatagtgtgtcaactcttagtctacacatttat |
962982 |
T |
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