View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_36 (Length: 280)
Name: NF18380_low_36
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 38644241 - 38643978
Alignment:
| Q |
13 |
caaaaacaatcaacacaaatgatgaaacacaacaccgtcgtttgtgtccccaacaaccttcggcggtggtt-----------tccctttccgtctaccta |
101 |
Q |
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| T |
38644241 |
caaaaacaatcaacacaaatggtgaaacacaacgccgtcgtttgtgtccccaacaacctccggcggtggaaaccaccgaccgtcccttttcgtctaccta |
38644142 |
T |
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| Q |
102 |
agctcactccgaccatttcgattatgattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacggcgg |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |
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| T |
38644141 |
agctcactccgaccatttcgattctgattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatacttacagcacggtgg |
38644042 |
T |
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| Q |
202 |
cggcgttggtggtgatggagtaactgtagccgtagccatattttgcatttgggtcattgtttct |
265 |
Q |
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| T |
38644041 |
cggcgttggtggtgatggagtaactgtaaccgtagccatattttgcatttgggtcattgtttct |
38643978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 13597775 - 13597704
Alignment:
| Q |
127 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacgg |
198 |
Q |
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| T |
13597775 |
gattccggttatgagttccctctctgatcctttgcttacttgtaacttcgtcttctcttgtttccggcacgg |
13597704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 38235608 - 38235504
Alignment:
| Q |
127 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacggcggcggcgttggtggtgatggagtaact |
226 |
Q |
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| T |
38235608 |
gattccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgtttccggcacggtggcggtggtggtggtggtggagtagct |
38235509 |
T |
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| Q |
227 |
gtagc |
231 |
Q |
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||||| |
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| T |
38235508 |
gtagc |
38235504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 38235404 - 38235376
Alignment:
| Q |
237 |
ccatattttgcatttgggtcattgtttct |
265 |
Q |
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| T |
38235404 |
ccatattttgcatttgggtcattgtttct |
38235376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 37609963 - 37609886
Alignment:
| Q |
127 |
gattccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatgtttacggcacggcggcgg |
204 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||| |
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| T |
37609963 |
gattccggttatgagttccctctctgatccttcgcttacttgtaacttcgtcttctcttgtttccggcacggtggcgg |
37609886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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