View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_41 (Length: 258)

Name: NF18380_low_41
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_41
NF18380_low_41
[»] chr7 (22 HSPs)
chr7 (99-191)||(31440920-31441012)
chr7 (18-98)||(1047423-1047503)
chr7 (18-98)||(40837181-40837261)
chr7 (23-98)||(3878322-3878398)
chr7 (18-99)||(2935069-2935150)
chr7 (18-99)||(9027607-9027688)
chr7 (18-98)||(26804345-26804426)
chr7 (18-98)||(22136878-22136958)
chr7 (18-98)||(40551905-40551985)
chr7 (18-98)||(22107867-22107947)
chr7 (18-98)||(40549627-40549707)
chr7 (18-98)||(27306687-27306767)
chr7 (23-98)||(35379-35455)
chr7 (18-98)||(1049732-1049813)
chr7 (50-98)||(7464981-7465029)
chr7 (18-100)||(18567361-18567444)
chr7 (18-100)||(31435505-31435588)
chr7 (52-100)||(48457439-48457487)
chr7 (18-98)||(25542281-25542361)
chr7 (50-99)||(34547325-34547374)
chr7 (51-96)||(40946076-40946121)
chr7 (50-98)||(30246642-30246690)
[»] scaffold0127 (1 HSPs)
scaffold0127 (18-99)||(12974-13055)
[»] chr5 (37 HSPs)
chr5 (18-99)||(2174679-2174760)
chr5 (18-98)||(34479892-34479972)
chr5 (18-98)||(34477552-34477632)
chr5 (18-98)||(31544798-31544878)
chr5 (18-98)||(25921912-25921992)
chr5 (18-98)||(31542442-31542522)
chr5 (18-98)||(39797849-39797929)
chr5 (34-98)||(21684905-21684969)
chr5 (18-99)||(10749504-10749585)
chr5 (18-98)||(18186506-18186587)
chr5 (18-98)||(659713-659794)
chr5 (18-94)||(4236374-4236451)
chr5 (18-98)||(10756960-10757040)
chr5 (18-98)||(15354985-15355065)
chr5 (18-98)||(15357261-15357341)
chr5 (50-98)||(31179885-31179933)
chr5 (18-98)||(38960524-38960604)
chr5 (18-98)||(20504371-20504452)
chr5 (18-98)||(21947770-21947851)
chr5 (18-98)||(38881845-38881925)
chr5 (23-99)||(16775896-16775973)
chr5 (53-98)||(23664834-23664879)
chr5 (53-98)||(23667109-23667154)
chr5 (53-98)||(23793708-23793753)
chr5 (30-98)||(31466428-31466496)
chr5 (18-98)||(36402764-36402845)
chr5 (18-99)||(20507920-20508002)
chr5 (18-99)||(2818765-2818848)
chr5 (39-103)||(661227-661291)
chr5 (50-98)||(1240078-1240126)
chr5 (50-98)||(6747044-6747092)
chr5 (52-99)||(10529592-10529639)
chr5 (31-98)||(40222414-40222481)
chr5 (31-98)||(42237954-42238021)
chr5 (18-98)||(12556360-12556441)
chr5 (50-99)||(6744800-6744849)
chr5 (50-98)||(22672504-22672552)
[»] chr8 (15 HSPs)
chr8 (18-98)||(43079347-43079427)
chr8 (18-98)||(43081722-43081802)
chr8 (21-98)||(18810483-18810560)
chr8 (18-98)||(18812668-18812748)
chr8 (18-98)||(12517484-12517565)
chr8 (23-94)||(14807552-14807624)
chr8 (23-98)||(27826782-27826857)
chr8 (23-98)||(27829093-27829168)
chr8 (23-94)||(28252050-28252122)
chr8 (18-77)||(3886360-3886419)
chr8 (56-98)||(44720617-44720660)
chr8 (18-98)||(15072506-15072587)
chr8 (50-98)||(9021590-9021638)
chr8 (18-98)||(15067777-15067858)
chr8 (50-98)||(23180043-23180091)
[»] chr6 (20 HSPs)
chr6 (17-98)||(26066530-26066611)
chr6 (18-98)||(26068802-26068882)
chr6 (18-98)||(14507636-14507716)
chr6 (18-98)||(33308685-33308765)
chr6 (18-98)||(33310954-33311034)
chr6 (18-98)||(29755199-29755279)
chr6 (18-94)||(11983486-11983562)
chr6 (52-98)||(4816739-4816786)
chr6 (18-98)||(1072314-1072395)
chr6 (18-98)||(8995255-8995336)
chr6 (18-98)||(9019702-9019783)
chr6 (34-98)||(15530597-15530661)
chr6 (50-98)||(1230719-1230767)
chr6 (50-98)||(17695334-17695382)
chr6 (23-98)||(19227873-19227948)
chr6 (50-98)||(26064756-26064804)
chr6 (50-98)||(26084725-26084773)
chr6 (50-98)||(28241812-28241860)
chr6 (50-101)||(26642826-26642877)
chr6 (50-101)||(26748792-26748843)
[»] chr2 (19 HSPs)
chr2 (18-98)||(19502470-19502550)
chr2 (21-98)||(19504807-19504884)
chr2 (18-103)||(24162672-24162757)
chr2 (18-94)||(27104519-27104595)
chr2 (18-98)||(45332595-45332675)
chr2 (18-98)||(36559278-36559358)
chr2 (18-98)||(43624004-43624085)
chr2 (18-98)||(36561597-36561677)
chr2 (18-98)||(40032505-40032586)
chr2 (18-98)||(21521153-21521234)
chr2 (34-95)||(6259290-6259351)
chr2 (50-100)||(20055252-20055302)
chr2 (23-99)||(42064230-42064307)
chr2 (52-98)||(45280457-45280503)
chr2 (50-98)||(17943210-17943258)
chr2 (50-98)||(20050506-20050554)
chr2 (50-98)||(22712978-22713026)
chr2 (50-98)||(27518103-27518151)
chr2 (50-98)||(30478666-30478714)
[»] chr3 (41 HSPs)
chr3 (18-100)||(53896674-53896756)
chr3 (18-98)||(6063926-6064006)
chr3 (18-98)||(38210067-38210147)
chr3 (18-98)||(50493676-50493756)
chr3 (18-98)||(7606883-7606963)
chr3 (18-98)||(38889757-38889838)
chr3 (18-98)||(22114762-22114842)
chr3 (18-98)||(18097341-18097422)
chr3 (18-98)||(18099626-18099707)
chr3 (18-98)||(35777163-35777243)
chr3 (18-100)||(10192449-10192531)
chr3 (18-100)||(10085529-10085611)
chr3 (18-97)||(5191374-5191454)
chr3 (50-98)||(25388618-25388666)
chr3 (50-98)||(3859317-3859365)
chr3 (50-98)||(6066243-6066291)
chr3 (18-98)||(5899457-5899539)
chr3 (18-98)||(5885983-5886064)
chr3 (18-98)||(11162891-11162971)
chr3 (31-99)||(6719584-6719652)
chr3 (31-102)||(48362119-48362190)
chr3 (18-98)||(32264500-32264580)
chr3 (23-98)||(32218836-32218912)
chr3 (23-98)||(11170145-11170220)
chr3 (31-100)||(24176997-24177066)
chr3 (23-98)||(26720268-26720344)
chr3 (50-99)||(43225826-43225875)
chr3 (31-98)||(1321161-1321228)
chr3 (50-98)||(5858197-5858245)
chr3 (50-98)||(27101749-27101797)
chr3 (50-98)||(51727495-51727543)
chr3 (51-98)||(4308771-4308818)
chr3 (31-98)||(10949743-10949810)
chr3 (31-98)||(27762490-27762557)
chr3 (53-98)||(43228032-43228077)
chr3 (50-98)||(9605102-9605150)
chr3 (50-98)||(10595493-10595541)
chr3 (50-98)||(25690845-25690893)
chr3 (50-98)||(35918438-35918486)
chr3 (50-98)||(47878633-47878681)
chr3 (50-98)||(54192897-54192945)
[»] chr4 (36 HSPs)
chr4 (18-99)||(9176955-9177036)
chr4 (18-98)||(7941133-7941213)
chr4 (18-98)||(16932280-16932360)
chr4 (18-96)||(51015042-51015120)
chr4 (18-98)||(11434769-11434849)
chr4 (18-98)||(16934634-16934714)
chr4 (18-98)||(22780872-22780952)
chr4 (18-98)||(22783237-22783317)
chr4 (18-105)||(5637926-5638013)
chr4 (18-94)||(37089833-37089910)
chr4 (18-98)||(9174605-9174684)
chr4 (18-98)||(3825031-3825112)
chr4 (23-98)||(11006705-11006781)
chr4 (23-94)||(24888594-24888666)
chr4 (23-98)||(36920050-36920125)
chr4 (23-98)||(38408993-38409069)
chr4 (18-98)||(36921953-36922033)
chr4 (23-98)||(22044855-22044930)
chr4 (18-98)||(22048495-22048575)
chr4 (18-96)||(22803191-22803270)
chr4 (50-100)||(8528916-8528966)
chr4 (18-98)||(48486113-48486194)
chr4 (52-98)||(18846923-18846971)
chr4 (23-93)||(52942931-52943002)
chr4 (31-98)||(4884531-4884598)
chr4 (51-98)||(6764654-6764701)
chr4 (18-99)||(31850057-31850139)
chr4 (51-98)||(47868195-47868242)
chr4 (50-100)||(8631914-8631964)
chr4 (50-99)||(16489000-16489049)
chr4 (50-98)||(15311994-15312042)
chr4 (50-98)||(15316630-15316678)
chr4 (50-98)||(18586616-18586664)
chr4 (50-98)||(26086244-26086292)
chr4 (50-98)||(31300074-31300122)
chr4 (50-98)||(40636868-40636916)
[»] chr1 (27 HSPs)
chr1 (18-98)||(6822775-6822855)
chr1 (18-98)||(20291280-20291360)
chr1 (18-98)||(47179428-47179508)
chr1 (18-98)||(13761577-13761657)
chr1 (18-98)||(20302198-20302278)
chr1 (18-98)||(47177078-47177158)
chr1 (18-98)||(51752104-51752184)
chr1 (18-94)||(16225891-16225967)
chr1 (18-98)||(51749778-51749858)
chr1 (23-98)||(10400293-10400369)
chr1 (18-100)||(23783236-23783318)
chr1 (18-98)||(28840418-28840499)
chr1 (23-98)||(15823286-15823362)
chr1 (18-71)||(16231368-16231421)
chr1 (18-98)||(28842233-28842314)
chr1 (18-78)||(6823643-6823703)
chr1 (18-96)||(38925917-38925996)
chr1 (29-98)||(14098441-14098510)
chr1 (18-98)||(47451405-47451486)
chr1 (50-98)||(2617280-2617328)
chr1 (31-98)||(39462258-39462325)
chr1 (31-98)||(25133681-25133748)
chr1 (18-98)||(49687301-49687382)
chr1 (38-98)||(3580099-3580159)
chr1 (50-98)||(2393764-2393812)
chr1 (50-98)||(2401678-2401726)
chr1 (50-98)||(9521367-9521415)
[»] scaffold0068 (1 HSPs)
scaffold0068 (34-98)||(28941-29005)
[»] scaffold0025 (2 HSPs)
scaffold0025 (23-94)||(69757-69829)
scaffold0025 (23-94)||(73468-73540)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-98)||(5927-6007)
[»] scaffold0140 (2 HSPs)
scaffold0140 (18-98)||(21915-21995)
scaffold0140 (18-98)||(24190-24270)
[»] scaffold0131 (1 HSPs)
scaffold0131 (29-97)||(14768-14837)
[»] scaffold0038 (1 HSPs)
scaffold0038 (50-98)||(41974-42022)
[»] scaffold0552 (1 HSPs)
scaffold0552 (51-98)||(1302-1349)
[»] scaffold0250 (1 HSPs)
scaffold0250 (18-98)||(2629-2710)
[»] scaffold1764 (1 HSPs)
scaffold1764 (50-98)||(1108-1156)
[»] scaffold0256 (1 HSPs)
scaffold0256 (50-98)||(15976-16024)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 31440920 - 31441012
Alignment:
Q  99 catacatttttggtttctaattagctttatctattctttttatgtttaaataacacaccactttctaaactataagcatcccttactataaat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31440920 catacatttttggtttctaattagctttatctattctttttatgtttaaataacacaccactttctaaactatgagcatcccttactataaat 31441012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1047423 - 1047503
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1047423 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 40837181 - 40837261
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40837181 aactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 3878398 - 3878322
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3878398 aaacctccaatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 2935150 - 2935069
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2935150 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacac 2935069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 9027607 - 9027688
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9027607 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacac 9027688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 26804426 - 26804345
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26804426 aactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtagaaacctgattttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 22136958 - 22136878
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22136958 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 40551985 - 40551905
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  40551985 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 22107947 - 22107867
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||| ||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22107947 aactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 40549707 - 40549627
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||| ||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  40549707 aactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 27306687 - 27306767
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||||||||||| |  ||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  27306687 aactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcaca 27306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 35455 - 35379
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||| || |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  35455 aaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1049732 - 1049813
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  || |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  1049732 aactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 1049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 7464981 - 7465029
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  7464981 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 7465029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 18567444 - 18567361
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||| ||||||||| ||||||||| |||||  || |||||||||||||| ||| |||| ||||||||||||| ||||||||||||    
T  18567444 aactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaa-cctgattttaagtcaactctcacaca 18567361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 31435505 - 31435588
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||| ||||||||| ||||||||| |||||  || |||||||||||||| ||| |||| ||||||||||||| ||||||||||||    
T  31435505 aactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaa-cctgattttaagtcaactctcacaca 31435588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 48457487 - 48457439
Alignment:
Q  52 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||||    
T  48457487 atcgtggcacgattctccagaattctgattttaagttaactctcacaca 48457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25542361 - 25542281
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  || ||||||||||  | |||||||  | ||||||||||||||||||||||    
T  25542361 aactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcaca 25542281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 34547325 - 34547374
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||||||    
T  34547325 ccatcgtgacacgattctccagatttctgattttaagttaactctcacac 34547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 40946121 - 40946076
Alignment:
Q  51 catcgtgccacgattctgcagaaacctgattttaagttaactctca 96  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||    
T  40946121 catcgtggcacgattcttcagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 30246690 - 30246642
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  30246690 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 30246642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 12974 - 13055
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12974 aactaaaacctccatcgtgccacgttgccttgacatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 13055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 2174760 - 2174679
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2174760 aactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 2174679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34479892 - 34479972
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479892 aactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34477552 - 34477632
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34477552 aactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31544878 - 31544798
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31544878 aactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 25921912 - 25921992
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25921912 aactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31542522 - 31542442
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  31542522 aactaaaacctccatcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 39797929 - 39797849
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39797929 aactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  34 gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 10749585 - 10749504
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10749585 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacac 10749504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 18186506 - 18186587
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  18186506 aactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcaca 18186587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 659794 - 659713
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  659794 aactgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgcag-aacctgattttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4236451 - 4236374
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||||||||    
T  4236451 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacaattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 10757040 - 10756960
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  10757040 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 15354985 - 15355065
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15354985 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 15357261 - 15357341
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15357261 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31179885 - 31179933
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31179885 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 38960524 - 38960604
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| |   |||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38960524 aactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 20504371 - 20504452
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||| |||||||||||||||  || |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  20504371 aactaaaacctccaatcgtgccacgttgcccagctatcgtgccacgatttctgcagaa-cctgattttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 21947851 - 21947770
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  21947851 aactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcag-aacctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 38881925 - 38881845
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  38881925 aactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 16775973 - 16775896
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||    
T  16775973 aaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaattctcacac 16775896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 23664879 - 23664834
Alignment:
Q  53 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23664879 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 23667154 - 23667109
Alignment:
Q  53 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23667154 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 23793708 - 23793753
Alignment:
Q  53 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23793708 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23793753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 31466428 - 31466496
Alignment:
Q  30 catcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||| | | ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  31466428 catcgtgccacgttgcccttcaatcgtgccacgattcctgca-aaacctgattttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36402764 - 36402845
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||| | ||||||  |||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  36402764 aactgaaacctccaatcgtgctatgttgcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 20507920 - 20508002
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||||||||| |||||| ||||||||   | |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  20507920 aactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcagaa-cctgattttaagttaactctcacac 20508002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 2818765 - 2818848
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaag-ttaactctcacac 99  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||||||    
T  2818765 aactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcag-aacctaattttaagtttaactctcacac 2818848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 661227 - 661291
Alignment:
Q  39 acgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacacatac 103  Q
    ||||||||| |||||| | |||||||| |||||||| |||||||||||||||||||||||| ||||    
T  661227 acgttgcctagccatcataccacgatttctgcagaa-cctgattttaagttaactctcacagatac 661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 1240126 - 1240078
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  1240126 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 6747092 - 6747044
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  6747092 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 6747044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 10529592 - 10529639
Alignment:
Q  52 atcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  10529592 atcgtggcacgattctccagaattctgattttaagttaactctcacac 10529639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 40222481 - 40222414
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  40222481 atcgtggcacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 40222414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 42238021 - 42237954
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  42238021 atcgtggcacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 42237954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 12556360 - 12556441
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| | |||||||||||||  |||||  |||||||||| |||||||| ||||||||||| ||||||||||||    
T  12556360 aactgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgcagaa-cctgattttaaattaactctcaca 12556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 6744849 - 6744800
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||| ||||||||| |||||  |||||||||| |||||||||||||    
T  6744849 ccatcgtggcacgattctccagaattctgattttaaattaactctcacac 6744800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 22672552 - 22672504
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  || ||||||||||||||||||||    
T  22672552 ccatcgtggcacgattctccagaattctaattttaagttaactctcaca 22672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 43079427 - 43079347
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43079427 aactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 43081802 - 43081722
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43081802 aactaaaacctccatcgtgccactttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 18810560 - 18810483
Alignment:
Q  21 taaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18810560 taaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 18812748 - 18812668
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  18812748 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 12517484 - 12517565
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12517484 aactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaactctcaca 12517565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 14807624 - 14807552
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| ||||| |||||||||   ||||| |||||||||||||||||||||||||||||||||||||||    
T  14807624 aaacctccaatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctgattttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 27826857 - 27826782
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  || |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  27826857 aaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcctgattttaagttaactctcaca 27826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 27829168 - 27829093
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  || |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  27829168 aaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcctgattttaagttaactctcaca 27829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 28252050 - 28252122
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  28252050 aaacctccaatcgtaccacgttgcctagccatcgtgccacgattcctgcag-atcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 3886360 - 3886419
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacct 77  Q
    |||| |||||||||||||||||||||| |  |||||| || |||||||||||||||||||    
T  3886360 aactgaaacctccatcgtgccacgttgtccagccatcatgtcacgattctgcagaaacct 3886419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 44720660 - 44720617
Alignment:
Q  56 tgccacgattctgcagaaa-cctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  44720660 tgccacgattctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 15072587 - 15072506
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||| |||||||||  ||||||||| |||||||| ||||||| | ||||||||||||||||||||||    
T  15072587 aactgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatc-tgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 9021590 - 9021638
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  9021590 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 9021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 15067858 - 15067777
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||| ||||||  |||||| |||||||||| ||||| ||| |||||||||||||||| ||||||    
T  15067858 aactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctgattttaagttaacactcaca 15067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 23180043 - 23180091
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||  ||||||||| ||||  ||||||||||||||||||||||||    
T  23180043 ccatcgtagcacgattctccagattcctgattttaagttaactctcaca 23180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 26066530 - 26066611
Alignment:
Q  17 taactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  26066530 taactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 26068802 - 26068882
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26068802 aactaaaacctccatcatgccacgttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 14507636 - 14507716
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14507636 aactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 33308765 - 33308685
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33308765 aactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 33311034 - 33310954
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33311034 aactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 29755199 - 29755279
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29755199 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 11983486 - 11983562
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    |||| ||||||||||||| ||| ||||||   ||||||| |||||||||||||||||||||||||||||||||||||    
T  11983486 aactgaaacctccatcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgattttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 4816739 - 4816786
Alignment:
Q  52 atcgtgccacgattctgcagaaa-cctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4816739 atcgtgccacgattctgcagaaaacctgattttaagttaactctcaca 4816786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1072314 - 1072395
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||   ||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  1072314 aacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaa-cctgattttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 8995336 - 8995255
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||||| || ||| | ||||||||||||||||||||||||    
T  8995336 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacag-atcctgattttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 9019783 - 9019702
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||||| || ||| | ||||||||||||||||||||||||    
T  9019783 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacag-atcctgattttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 15530597 - 15530661
Alignment:
Q  34 gtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||| ||  |||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  15530597 gtgccacgttacccagccatcgtgccacgattcctgcagat-cctgattttaagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 1230719 - 1230767
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  1230719 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 1230767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 17695334 - 17695382
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  17695334 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 17695382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 19227873 - 19227948
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||| ||||||||||||   |||||||||||||||| |||||| | | | ||||||||||||||||||||    
T  19227873 aaacctccatcatgccacgttgcccaaccatcgtgccacgattcctgcag-atcttaattttaagttaactctcaca 19227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 26064804 - 26064756
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  26064804 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 26064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 26084773 - 26084725
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  26084773 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 26084725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 28241812 - 28241860
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  28241812 ccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 26642877 - 26642826
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacacat 101  Q
    |||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  26642877 ccatcgtggcacgtttctccagattcctgattttaagttaactctcacacat 26642826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 26748843 - 26748792
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacacat 101  Q
    |||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  26748843 ccatcgtggcacgtttctccagattcctgattttaagttaactctcacacat 26748792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 19502470 - 19502550
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19502470 aactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 19504807 - 19504884
Alignment:
Q  21 taaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  19504807 taaaacctccatcgtgccacgttgccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcaca 19504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 24162672 - 24162757
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacacatac 103  Q
    |||| ||||||||||||||||||||||||   |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  24162672 aactgaaacctccatcgtgccacgttgcccaaccattgtgccacgattctgcagaaacttgattttaagttaactctcacaaatac 24162757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27104595 - 27104519
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    |||| |||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||    
T  27104595 aactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgattttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 45332595 - 45332675
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45332595 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36559278 - 36559358
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36559278 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 43624004 - 43624085
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  43624004 aactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcagaaacctgattttaagttaactttcaca 43624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36561597 - 36561677
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||  |  |||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36561597 aactaaaacctccatcgtgccgtgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 40032505 - 40032586
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40032505 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcag-aacctgattttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 21521153 - 21521234
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  21521153 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtag-aacctgattttaagttaactctcaca 21521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 6259290 - 6259351
Alignment:
Q  34 gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 95  Q
    ||||||||||||   ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  6259290 gtgccacgttgcacagccatcgtgccacgatttctgcagaa-cctgattttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 20055252 - 20055302
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||||| || |||||| |||||  |||||||||||||||||||||||||    
T  20055252 ccatcgtggcatgattctccagaattctgattttaagttaactctcacaca 20055302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 42064307 - 42064230
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||| |||| ||||||||||  || ||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  42064307 aaacctccagtcgtaccacgttgcccagcaatcgtgccacgattcctgcagat-cttgattttaagttaactctcacac 42064230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 45280457 - 45280503
Alignment:
Q  52 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  45280457 atcgtggcacgattctccagaattctgattttaagttaactctcaca 45280503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 17943258 - 17943210
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  17943258 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 17943210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 20050506 - 20050554
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||   ||||||||||||||||||||||    
T  20050506 ccatcgtggcacgattctccagaattttgattttaagttaactctcaca 20050554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 22712978 - 22713026
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  22712978 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 22713026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 27518103 - 27518151
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||   ||||||||||||||||||||||    
T  27518103 ccatcgtggcacgattctccagaattttgattttaagttaactctcaca 27518151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 30478714 - 30478666
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  30478714 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 30478666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 53896674 - 53896756
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53896674 aactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 53896756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 6063926 - 6064006
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  6063926 aactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 38210147 - 38210067
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38210147 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 50493756 - 50493676
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50493756 aactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 50493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 7606883 - 7606963
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7606883 aactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 38889838 - 38889757
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcag-aaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  38889838 aactgaaacctccatcgtgccacgttgccttgccatcgtaccacgattctgcagaaaacctaattttaagttaactctcaca 38889757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22114762 - 22114842
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22114762 aactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 18097341 - 18097422
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18097341 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 18099626 - 18099707
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18099626 aactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 35777243 - 35777163
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||  |||||||||||||||||||||| || ||||||||||||||||||||    
T  35777243 aactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcagaaatctaattttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 10192449 - 10192531
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||| |||||||||| |||||    
T  10192449 aactgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccgcataaatctgattttcagttaactcttacaca 10192531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 10085529 - 10085611
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||| ||| ||| |||||||| |||||||||| |||||    
T  10085529 aactgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccgcataaatctgattttcagttaactcttacaca 10085611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 5191454 - 5191374
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcac 97  Q
    |||| ||||||||| |||||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5191454 aactgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 25388666 - 25388618
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25388666 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 25388618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3859365 - 3859317
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3859365 ccatcgtgccacgattatgcagaaacctgattttaagttaactctcaca 3859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 6066243 - 6066291
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6066243 ccatcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 5899539 - 5899457
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgatttta--agttaactctcaca 98  Q
    ||||||||| ||||||||||||||||||| | | ||||||||| |||| ||||||||||||||| ||  ||||||||||||||    
T  5899539 aactaaaacatccatcgtgccacgttgcccttcaatcgtgccatgattatgcagaaacctgattataagagttaactctcaca 5899457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 5886064 - 5885983
Alignment:
Q  18 aactaaaacctccatcgtgccacgtt-gccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||| ||  | | ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  5886064 aactaaaacatccatcgtgccacgtttgcgcttcaatcgtgccacgattctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 11162971 - 11162891
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  || |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  11162971 aactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 11162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 6719584 - 6719652
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||||| |||| | | ||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  6719584 atcgtgccacgatgcccttcaatcgtgccacgattaagcagaaacctgattttaagttaattctcacac 6719652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 48362119 - 48362190
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacacata 102  Q
    ||||||||||||||||   |||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  48362119 atcgtgccacgttgcccaaccatcgtgccacgatttctacagaa-cctgattttaagttaactctcacacata 48362190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 32264500 - 32264580
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||| ||  ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  32264500 aactgaaacctccaatcgtgccacgttccca-gccatcgtgccacgatttctgca-aaacctgattttaagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 32218912 - 32218836
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||    ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  32218912 aaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaa-cctgattttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 11170220 - 11170145
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  || | |||||||||||| |||||| | | ||||||||||||||||||||||    
T  11170220 aaacctccatcgtgccacgttgcccagcaaccgtgccacgattcctgcag-atcttgattttaagttaactctcaca 11170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 24177066 - 24176997
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||||||||||||| ||| | |||||||||||| || ||||| | ||||||||||||||||||||||||    
T  24177066 atcgtgccacgttgccctgcaaacgtgccacgatttctccagaa-cttgattttaagttaactctcacaca 24176997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 26720344 - 26720268
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| || |||||||||||   |||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  26720344 aaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcagat-cctgattttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 43225875 - 43225826
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  43225875 ccatcgtggcacgattctccagaattctgattttaagttaactctcacac 43225826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1321228 - 1321161
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||  || |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  1321228 atcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 5858245 - 5858197
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  5858245 ccatcgtggcacgattctccagattcctgattttaagttaactctcaca 5858197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 27101749 - 27101797
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  27101749 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 27101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 51727495 - 51727543
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  51727495 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 4308771 - 4308818
Alignment:
Q  51 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  4308771 catcgtggcacgattctccagaattctgattttaagttaactctcaca 4308818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 10949743 - 10949810
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| |||| |||| ||||  ||||||||||||||||||||||||    
T  10949743 atcgtggcacgttgcttctccatcgtggcacgtttctccagattcctgattttaagttaactctcaca 10949810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 27762490 - 27762557
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| |||| |||| ||||  ||||||||||||||||||||||||    
T  27762490 atcgtggcacgttgcttctccatcgtggcacgtttcttcagattcctgattttaagttaactctcaca 27762557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 43228077 - 43228032
Alignment:
Q  53 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||| ||||||||| |||||  |||||||||||||||||||||||    
T  43228077 tcgtggcacgattctccagaattctgattttaagttaactctcaca 43228032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 9605102 - 9605150
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||  ||||||||| |||||  |||||||||||||||||||||||    
T  9605102 ccatcgtagcacgattctccagaattctgattttaagttaactctcaca 9605150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 10595493 - 10595541
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  10595493 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 10595541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25690845 - 25690893
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||  |||||  |||||||||||||||||||||||    
T  25690845 ccatcgtggcacgattcatcagaattctgattttaagttaactctcaca 25690893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 35918438 - 35918486
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| || ||  |||||||||||||||||||||||    
T  35918438 ccatcgtggcacgattctccataattctgattttaagttaactctcaca 35918486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 47878633 - 47878681
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  47878633 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 47878681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 54192945 - 54192897
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  54192945 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 54192897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 9176955 - 9177036
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||    
T  9176955 aactaaaacctccatcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacac 9177036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 7941213 - 7941133
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7941213 aactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 16932280 - 16932360
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16932280 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 51015120 - 51015042
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 96  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  51015120 aactgaaacctccatcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 11434849 - 11434769
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11434849 aactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 16934634 - 16934714
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16934634 aactaaaacctccatcgtgccatgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22780872 - 22780952
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22780872 aactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22783237 - 22783317
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22783237 aactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22783317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 5637926 - 5638013
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacacatacat 105  Q
    |||| ||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5637926 aactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcacacaaacat 5638013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37089833 - 37089910
Alignment:
Q  18 aactaaaacctc-catcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37089833 aactaaaacatctcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9174605 - 9174684
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9174605 aactaaaacctccatcgtgctacgttgcctagccgtcgtgccacgattctgcag-aacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 3825031 - 3825112
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3825031 aactgaaacctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 11006705 - 11006781
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgattctgca-gaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||  |||||||||||||||||||||||||||    
T  11006705 aaacctccatcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 24888666 - 24888594
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  24888666 aaacctccaatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 36920050 - 36920125
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  36920050 aaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcag-aacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 38409069 - 38408993
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||| ||||  || ||||||||||||||||||||||| || ||||||||||||||||||||    
T  38409069 aaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 36921953 - 36922033
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||| ||||||  |||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  36921953 aactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattttgcagaa-cctgattttaagttaactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 22044855 - 22044930
Alignment:
Q  23 aaacctccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||| | | |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  22044855 aaacctccatcgtgccacgttgcccttcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcaca 22044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22048495 - 22048575
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||||| | | ||||||||||||||||   | | | ||||||||||||||||||||||    
T  22048495 aactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcaca 22048575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 22803191 - 22803270
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 96  Q
    |||| ||||||||| |||||||||||||||  |||||||| ||||||||||  |||||  ||||||||||||||||||||    
T  22803191 aactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctatagaaatttgattttaagttaactctca 22803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 8528966 - 8528916
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  8528966 ccatcgtgacacgattctccagaaatctgattttaagttaactctcacaca 8528916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 48486194 - 48486113
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||||||||||||   ||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  48486194 aactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcagga-cctgattttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 18846971 - 18846923
Alignment:
Q  52 atcgtgccacgattctgcagaaac--ctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  18846971 atcgtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 52942931 - 52943002
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactc 93  Q
    ||||||||| |||||||||||||||   |||||||||||||| || |||| ||||||||||||||||||||||    
T  52942931 aaacctccaatcgtgccacgttgcccaaccatcgtgccacgatttttgca-aaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 4884598 - 4884531
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  4884598 atcgtgacacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 4884531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 6764701 - 6764654
Alignment:
Q  51 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  6764701 catcgtggcacgattctccagaattctgattttaagttaactctcaca 6764654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 31850057 - 31850139
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcacac 99  Q
    |||| ||||||||| |||||||||||||||  || |||||||||| |||| ||||||  | |||||||||||||||||||||||    
T  31850057 aactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcagat-cttgattttaagttaactctcacac 31850139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 47868242 - 47868195
Alignment:
Q  51 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  47868242 catcgtggcacgattctccagaattctgattttaagttaactctcaca 47868195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 8631914 - 8631964
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||| |||||    
T  8631914 ccatcgtggcacgattctccagaattctgattttaagttaactctgacaca 8631964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 16489049 - 16489000
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcacac 99  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||||||    
T  16489049 ccatcgtggcacgattctccagatttctgattttaagttaactctcacac 16489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 15312042 - 15311994
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  15312042 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 15311994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 15316678 - 15316630
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  15316678 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 15316630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 18586664 - 18586616
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  18586664 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 18586616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 26086244 - 26086292
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| |||||||||  ||||  |||||||||||||||||||||||    
T  26086244 ccatcgtggcacgattctctagaattctgattttaagttaactctcaca 26086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 31300122 - 31300074
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  31300122 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 31300074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 40636916 - 40636868
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| || ||  |||||||||||||||||||||||    
T  40636916 ccatcgtggcacgattctccaaaattctgattttaagttaactctcaca 40636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 6822855 - 6822775
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6822855 aactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20291360 - 20291280
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20291360 aactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 20291280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 47179508 - 47179428
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47179508 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 13761657 - 13761577
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13761657 aactgaaacctccatcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20302278 - 20302198
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  20302278 aactgaaacctccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 47177158 - 47177078
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  47177158 aactaaaacctccatcgtgccacgttgcccagtcgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 51752184 - 51752104
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51752184 aactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 16225967 - 16225891
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    |||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  16225967 aactaaaacctccatcgtgccacgttgcccaaccgtcgtgccacgattctgcagaaacctgattttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 51749858 - 51749778
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51749858 aactgaaacctccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 10400293 - 10400369
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10400293 aaacctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 23783318 - 23783236
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaca 100  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23783318 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaca 23783236  T

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Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 28840499 - 28840418
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||    
T  28840499 aactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaactttcaca 28840418  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 15823362 - 15823286
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| |||||||||||||||  ||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  15823362 aaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcag-atcctgattttaagttaactctcaca 15823286  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 16231421 - 16231368
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcag 71  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  16231421 aactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcag 16231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 28842314 - 28842233
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| |||||    
T  28842314 aactgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacag-atcctgattttaagttaactttcaca 28842233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 6823703 - 6823643
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctg 78  Q
    |||| ||||||||||||||||||||||||   ||||||||||| ||||||||| |||||||    
T  6823703 aactgaaacctccatcgtgccacgttgcccaaccatcgtgccatgattctgcaaaaacctg 6823643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 38925917 - 38925996
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 96  Q
    |||| ||||||||| |||||||||||||||  |||||||| |||||||| |||| ||| ||||||||||||||||||||||    
T  38925917 aactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaa-cctgattttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 14098441 - 14098510
Alignment:
Q  29 ccatcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||| |||   ||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  14098441 ccatcgtgccacggtgctcagccatcgtgccacgatttctgcagaatc-tgattttaagttaactctcaca 14098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 47451486 - 47451405
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| ||||||||| |||||  ||||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  47451486 aactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2617328 - 2617280
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  2617328 ccatcgtggcacgattctccagaattctgattttaagttaactctcaca 2617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 39462325 - 39462258
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||   |||| ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  39462325 atcgtgccacgttgcccaaccattgtgtcacgatttctgcagaa-cctgattttaagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 25133748 - 25133681
Alignment:
Q  31 atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||| |||||||| |  |||||||| |||| |||| ||||  ||||||||||||||||||||||||    
T  25133748 atcgtggcacgttgcttctccatcgtgacacgtttctccagattcctgattttaagttaactctcaca 25133681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 49687382 - 49687301
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| | |||||||||||||  |||||| |||||||||| || || || ||||||||||||||||||||||||    
T  49687382 aactgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 49687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3580099 - 3580159
Alignment:
Q  38 cacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||| ||| ||||||||||||||| |||| || ||||||||||||||||||| ||||    
T  3580099 cacgttgccctgcaatcgtgccacgattcctgcataa-cctgattttaagttaactcccaca 3580159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 2393764 - 2393812
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  2393764 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 2393812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 2401678 - 2401726
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  2401678 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 2401726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 9521415 - 9521367
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  9521415 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 9521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  34 gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 69757 - 69829
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  69757 aaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaactct 69829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 73468 - 73540
Alignment:
Q  23 aaacctcca-tcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactct 94  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  73468 aaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcataaatctgattttaagttaactct 73540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 6007 - 5927
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6007 aactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 21995 - 21915
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  21995 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 24270 - 24190
Alignment:
Q  18 aactaaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||||||||||||||||| ||  |||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  24270 aactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 14837 - 14768
Alignment:
Q  29 ccatcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 97  Q
    ||||||| |||||||||| | | ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  14837 ccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 41974 - 42022
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  41974 ccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 42022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 1302 - 1349
Alignment:
Q  51 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  1302 catcgtggcacgattctccagaattctgattttaagttaactctcaca 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 2710 - 2629
Alignment:
Q  18 aactaaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctgattttaagttaactctcaca 98  Q
    |||| ||||||||| |||||||||||||||| || |||||| ||| |||| ||||||  | ||||||||||||||||||||||    
T  2710 aactgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagat-cttgattttaagttaactctcaca 2629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 1156 - 1108
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  1156 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 1108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 16024 - 15976
Alignment:
Q  50 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 98  Q
    |||||||| ||||||||| ||||   |||||||||||||||||||||||    
T  16024 ccatcgtggcacgattctccagatttctgattttaagttaactctcaca 15976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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