View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_44 (Length: 244)

Name: NF18380_low_44
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_44
NF18380_low_44
[»] chr1 (4 HSPs)
chr1 (1-228)||(13062211-13062438)
chr1 (31-116)||(17115023-17115108)
chr1 (40-121)||(41035292-41035373)
chr1 (36-78)||(39332133-39332175)
[»] chr3 (5 HSPs)
chr3 (38-208)||(29346473-29346643)
chr3 (1-175)||(3395846-3396020)
chr3 (1-68)||(35526813-35526880)
chr3 (1-119)||(51524605-51524723)
chr3 (40-95)||(31163391-31163446)
[»] chr7 (2 HSPs)
chr7 (2-228)||(19408102-19408327)
chr7 (1-119)||(26449768-26449886)
[»] chr4 (5 HSPs)
chr4 (1-163)||(37049718-37049880)
chr4 (15-119)||(12580073-12580177)
chr4 (1-78)||(16832422-16832499)
chr4 (1-124)||(19852208-19852325)
chr4 (30-95)||(6659175-6659240)
[»] chr6 (2 HSPs)
chr6 (17-166)||(25167558-25167707)
chr6 (31-179)||(10989693-10989841)
[»] chr8 (5 HSPs)
chr8 (1-119)||(29368855-29368973)
chr8 (1-119)||(8831501-8831619)
chr8 (1-119)||(28225995-28226113)
chr8 (1-101)||(399998-400098)
chr8 (31-68)||(36206711-36206748)
[»] chr2 (1 HSPs)
chr2 (21-53)||(37344438-37344470)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13062211 - 13062438
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  13062211 acactctttaaggctgcagcagaatggaaggaggatttggaagcaagaaccaagatttggcttgaagggagcttgtcaactgtcaaattagcatagctgg 13062310  T
Q  101 tagttataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaa 200  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13062311 tagttataggttgcggcataggagtaagtactggagtatccacccaagcctttaacctgtctgaatccacaactctagcatcaatgctaccctgctcaaa 13062410  T
Q  201 agaaagggacgaagggttggggaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  13062411 agaaagggacgaagggttggggaatgac 13062438  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 17115023 - 17115108
Alignment:
Q  31 gaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcgg 116  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||||  ||||||| |||||||| ||| ||||| | |||||||    
T  17115023 gagggtttggaaccatgaaccaagatttggcttgaagagagcttgtcatttgtcaaactagcatagctggcagttacaagttgcgg 17115108  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 41035292 - 41035373
Alignment:
Q  40 gaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgg 121  Q
    |||||| |||||||  |||||||||||||||  ||||||  ||||||| || |||||  |||||||||||| ||||||||||    
T  41035292 gaagcatgaaccaatatttggcttgaagggagtttgtcacttgtcaaactatcatagcgggtagttataggctgcggcatgg 41035373  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 39332175 - 39332133
Alignment:
Q  36 tttggaagcaggaaccaaggtttggcttgaagggaacttgtca 78  Q
    |||||||||||| | |||||||||||||||||||| |||||||    
T  39332175 tttggaagcagggatcaaggtttggcttgaagggagcttgtca 39332133  T

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Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 29346643 - 29346473
Alignment:
Q  38 tggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagcactggagt 137  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||| ||||||||||||||| || ||||||||||||||    
T  29346643 tggaaggaggaaccaaggtttggcttgaagggagcttgtcagctgtcaaataagcatagctggtaggtataggttgcggcataggggtaagcactggagt 29346544  T
Q  138 atccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaaaggg 208  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||    
T  29346543 atccacccaaacctttaacctgtctgaatccacacctctagcatcaaagctaccctgctcaaatgaaaggg 29346473  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 3395846 - 3396020
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| || || |||| ||||||||||||||||||| | |||||||||  ||||||||||||||| ||||  |  ||||||| |||||||| | |    
T  3395846 acactctttagggctgtagcaaaatggaaggaggatttggatgtaggaaccaacatttggcttgaagggagcttgctatttgtcaaactagcatagctag 3395945  T
Q  101 tagttataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactc 175  Q
    ||||||||| |||||| || |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  3395946 tagttatagcttgcggtataggagtaagcactagagtatctacccaagcctttaacctgtctggatccacaactc 3396020  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35526813 - 35526880
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagg 68  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  35526813 acactctttaaggctgcaacagaatggaaggaggatttggaagcaagaagcaagggttggcttgaagg 35526880  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 51524723 - 51524605
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||| | || ||| ||||||||||  |||| ||||||| || |||||||| ||||||||||||||| |||||||  ||||||| || |||||  ||    
T  51524723 acactcttaagggctgcggcagaatggagagagggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactatcatagcggg 51524624  T
Q  101 tagttataggttgcggcat 119  Q
    |||||| ||| ||||||||    
T  51524623 tagttacaggctgcggcat 51524605  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 31163391 - 31163446
Alignment:
Q  40 gaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcata 95  Q
    ||||||||||||||||||||| ||||||||| |||||||  ||||||| |||||||    
T  31163391 gaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagcata 31163446  T

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Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 19408102 - 19408327
Alignment:
Q  2 cactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggt 101  Q
    |||| ||||||| | || |||||| ||||||||||||||||  || ||||||| ||||||||||||||| |||||||  |||||||||||||||| ||||    
T  19408102 cactttttaaggctacaacagaattgaaggaggatttggaataagtaaccaagatttggcttgaagggagcttgtcagttgtcaaattagcatagctggt 19408201  T
Q  102 agttataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaa 201  Q
    |||||||||||| | ||| ||||||||||||||||| |||| ||||||||||||| |||| | ||||| ||||||||||  | ||||| | ||||||| |    
T  19408202 agttataggttgagacatcggagtaagcactggagtttccatccaagcctttaacatgtcaggatccataactctaacagtagtgcta-cttgctcaata 19408300  T
Q  202 gaaagggacgaagggttggggaatgac 228  Q
    |||||||||| ||||||||||||||||    
T  19408301 gaaagggacggagggttggggaatgac 19408327  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 26449768 - 26449886
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||| | || ||||||| ||||||  |||| |||||| | |||||||||| ||||| ||||||||| |||||||  ||||||| || |||||| ||    
T  26449768 acactcttaagggctgcagcaaaatggagagagggtttggaggtaggaaccaagttttggtttgaagggagcttgtcacttgtcaaactatcatagtagg 26449867  T
Q  101 tagttataggttgcggcat 119  Q
    |||||| ||||||||||||    
T  26449868 tagttacaggttgcggcat 26449886  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37049880 - 37049718
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| ||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||| |||||||| | |    
T  37049880 acactctttagggcagcagcagaatgaaaggaggatttggaagcaggaaccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctag 37049781  T
Q  101 tagttataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctg 163  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||| ||| ||||||||| ||||    
T  37049780 tagttataggttgaggcataggagtaagccctggagtatccaccgaagtctttaacctatctg 37049718  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 12580073 - 12580177
Alignment:
Q  15 tgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgc 114  Q
    ||||||||||||||  |||| |||| | ||| |||||||  ||||| ||||||||| |||||||  ||||||| || |||||| |||||||||||| |||    
T  12580073 tgcagcagaatggagagagggtttgaaggcatgaaccaaattttggtttgaagggagcttgtcacttgtcaaactatcatagtaggtagttataggctgc 12580172  T
Q  115 ggcat 119  Q
    |||||    
T  12580173 ggcat 12580177  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 16832422 - 16832499
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtca 78  Q
    |||||||||| || ||||||||||||||  | | ||||| ||||| ||| ||| |||||||||||||||| |||||||    
T  16832422 acactctttagggctgcagcagaatggagagcgaatttgaaagcaagaatcaaagtttggcttgaagggagcttgtca 16832499  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 19852325 - 19852208
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| || ||||||||||||||  ||||||||| ||  |||||      ||||||||||||||  |||||||  ||||||| |||||||  |||    
T  19852325 acactctttagggctgcagcagaatggagagaggatttgaaaataggaa------tttggcttgaagggtgcttgtcacttgtcaaactagcataactgg 19852232  T
Q  101 tagttataggttgcggcatgggag 124  Q
    |||||| |||||| ||||| ||||    
T  19852231 tagttacaggttgaggcataggag 19852208  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 6659175 - 6659240
Alignment:
Q  30 ggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcata 95  Q
    ||||| ||||||||| ||||||||| |||||||||||| || |||||||  | ||||| |||||||    
T  6659175 ggagggtttggaagccggaaccaagatttggcttgaagagagcttgtcacttatcaaactagcata 6659240  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 25167707 - 25167558
Alignment:
Q  17 cagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcgg 116  Q
    |||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||  ||||||| |||||||| | |||||||||||||| ||    
T  25167707 cagcagaatgaaaggaggatttggaagcaggaaccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgagg 25167608  T
Q  117 catgggagtaagcactggagtatccacccaagcctttaacctgtctgaat 166  Q
    ||| |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  25167607 cataggagtaagcactggagtatctacccaagtctttaacctatctgaat 25167558  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 10989841 - 10989693
Alignment:
Q  31 gaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttggtagttataggttgcggcatgggagtaagca 130  Q
    ||||| ||||||||||||||||| |||||| ||||||||| |||||||| ||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||    
T  10989841 gaggagttggaagcaggaaccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatagttggttgttgtaggttgtggcataggagtaagca 10989742  T
Q  131 ctggagtatccacccaagcctttaacctgtctgaatccacaactctaac 179  Q
    |||||||||| |||||| |||| ||||||| || | |||||||||||||    
T  10989741 ctggagtatctacccaatccttcaacctgtttggagccacaactctaac 10989693  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29368973 - 29368855
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||| ||| |||||||| |||||||||||     
T  29368973 acactttttaaggctgcagcagaatgaaaggaggatttggaagcatgaaccaaagtttggcttgaagggagcttatcagctgtcaaactagcatagttgc 29368874  T
Q  101 tagttataggttgcggcat 119  Q
    |||| ||||||||| ||||    
T  29368873 tagtaataggttgcagcat 29368855  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8831501 - 8831619
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| || ||||||||||||||  ||||||||||||| || || |||| ||||||||||||||| |||||||  ||||||| ||||||||||||    
T  8831501 acactctttagggctgcagcagaatggagagaggatttggaagtagaaatcaagatttggcttgaagggagcttgtcacttgtcaaactagcatagttgg 8831600  T
Q  101 tagttataggttgcggcat 119  Q
    |||||| |||||| |||||    
T  8831601 tagttacaggttgaggcat 8831619  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 28225995 - 28226113
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| || ||||||||||||||  || ||||||||||||||| ||| |||||||| |||||||| ||| |||  ||||||| ||||||||||||    
T  28225995 acactctttagggctgcagcagaatggagagatgatttggaagcaggagccatggtttggcatgaagggatcttttcacttgtcaaactagcatagttgg 28226094  T
Q  101 tagttataggttgcggcat 119  Q
    |||||| | ||||||||||    
T  28226095 tagttacatgttgcggcat 28226113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 399998 - 400098
Alignment:
Q  1 acactctttaaggttgcagcagaatggaaggaggatttggaagcaggaaccaaggtttggcttgaagggaacttgtcaactgtcaaattagcatagttgg 100  Q
    |||||||||| |||| ||| ||||||||  | ||||||||||| ||||||||| |||||||||||||| | | ||||   ||||||| |||||||| |||    
T  399998 acactctttagggttccagtagaatggagaggggatttggaagaaggaaccaaagtttggcttgaaggtagcgtgtctcttgtcaaactagcatagctgg 400097  T
Q  101 t 101  Q
    |    
T  400098 t 400098  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 36206711 - 36206748
Alignment:
Q  31 gaggatttggaagcaggaaccaaggtttggcttgaagg 68  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  36206711 gaggagttggaagcaggaactaaggtttggcttgaagg 36206748  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 37344470 - 37344438
Alignment:
Q  21 agaatggaaggaggatttggaagcaggaaccaa 53  Q
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T  37344470 agaatggaaggaggatttggaagcaggaaccaa 37344438  T

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