View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_45 (Length: 240)
Name: NF18380_low_45
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 34577194 - 34576989
Alignment:
| Q |
19 |
ccttttgacaacatctctccttgcaggacgcaaaattggaagcttaacagtgaacttagtagcaatcttttaatacatcttcaacacactttgataatgc |
118 |
Q |
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| T |
34577194 |
ccttttgacaacatctctccttgcaggacgcaaaattggaagcttagcagtgaacttagtagcaatcttttaatacatcttcaacacactttgatgatgc |
34577095 |
T |
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| Q |
119 |
aactctatcatcaagaatgtttagtacactttcgcgatcacagaaattcgccataacccaataaacaatatcttgtgtttctccaattcttcttcaacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577094 |
aactctatcatcaagaatgtttagtacactttcgcgatcacagaaattcgccataacccaataaacaatatcttgtgtttctccaattcttcttcaacaa |
34576995 |
T |
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| Q |
219 |
cttcat |
224 |
Q |
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|||||| |
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| T |
34576994 |
cttcat |
34576989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 12061904 - 12062007
Alignment:
| Q |
115 |
atgcaactctatcatcaagaatgtttagtacactttcgcgatcacagaaattcgccataacccaataaacaatatcttgtgtttctcca-attcttcttc |
213 |
Q |
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| T |
12061904 |
atgcaactctaccatcaagaatgctgagtacactttcgcgatcgttgagattactcataacccaatgaacaatgtcttttgcttctccatattcttcttc |
12062003 |
T |
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| Q |
214 |
aaca |
217 |
Q |
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|||| |
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| T |
12062004 |
aaca |
12062007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 38474936 - 38474850
Alignment:
| Q |
106 |
actttgataatgcaactctatcatcaa---gaatgtttagtacactttcgcgatcacagaaattcgccataacccaataaacaatat |
189 |
Q |
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|||||||| |||||||||||||||||| ||||||| |||||||||| |||||| || ||| | |||||||||||||||||||| |
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| T |
38474936 |
actttgatgatgcaactctatcatcaaaaagaatgttgagtacactttaacgatcattgagattagtcataacccaataaacaatat |
38474850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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