View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_46 (Length: 239)
Name: NF18380_low_46
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41718375 - 41718166
Alignment:
| Q |
1 |
aagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaa |
100 |
Q |
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| T |
41718375 |
aagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaa |
41718276 |
T |
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| Q |
101 |
tgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggct |
200 |
Q |
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| T |
41718275 |
tgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggct |
41718176 |
T |
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| Q |
201 |
tatgtgttca |
210 |
Q |
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|||||||||| |
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| T |
41718175 |
tatgtgttca |
41718166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41723101 - 41722892
Alignment:
| Q |
1 |
aagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaa |
100 |
Q |
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| T |
41723101 |
aagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaa |
41723002 |
T |
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| Q |
101 |
tgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggct |
200 |
Q |
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| T |
41723001 |
tgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggct |
41722902 |
T |
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| Q |
201 |
tatgtgttca |
210 |
Q |
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| T |
41722901 |
tatgtgttca |
41722892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
| Q |
79 |
gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa |
172 |
Q |
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||||||||||||||||||| ||| | ||||| ||||| | |||| ||||| ||||| ||||||| |||||||| | ||||||||||||||||| |
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| T |
48781360 |
gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa |
48781266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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