View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18380_low_49 (Length: 238)

Name: NF18380_low_49
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18380_low_49
NF18380_low_49
[»] chr4 (4 HSPs)
chr4 (15-210)||(36912622-36912815)
chr4 (150-207)||(9521879-9521936)
chr4 (152-212)||(23499433-23499493)
chr4 (151-214)||(31389124-31389187)
[»] chr7 (6 HSPs)
chr7 (150-206)||(30969761-30969817)
chr7 (147-214)||(19267362-19267429)
chr7 (152-206)||(37757518-37757572)
chr7 (152-206)||(37763266-37763320)
chr7 (147-206)||(38603013-38603072)
chr7 (150-215)||(34383344-34383410)
[»] chr6 (3 HSPs)
chr6 (146-214)||(14536123-14536191)
chr6 (150-214)||(14518629-14518693)
chr6 (150-212)||(5736388-5736450)
[»] chr8 (1 HSPs)
chr8 (152-223)||(39421524-39421595)
[»] chr1 (2 HSPs)
chr1 (147-213)||(51672465-51672531)
chr1 (157-214)||(18280482-18280539)
[»] chr2 (1 HSPs)
chr2 (150-213)||(1070725-1070788)
[»] chr3 (2 HSPs)
chr3 (156-206)||(39736684-39736734)
chr3 (146-203)||(41417151-41417208)
[»] chr5 (2 HSPs)
chr5 (157-196)||(1815573-1815612)
chr5 (147-206)||(18345704-18345763)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 36912622 - 36912815
Alignment:
Q  15 tcaggttatttggagcgttgttgtgtgagttcattgaccattgaggaatcaaattatttagggatggtgtgactgactgtaatgaggctatttctcaggt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36912622 tcaggttatttggagcgttgttgtgtgagttcattgaccattgaggaatcaaattatttagggatggtgtgactgactgtaatgaggccatttctcaggt 36912721  T
Q  115 taaaacaacttcttggag-ttggtttgtgtttcgagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagat 210  Q
    |||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912722 taaaacaacttcttggagtttggtttgtgtttcgagtaaagtg---agtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagat 36912815  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 9521936 - 9521879
Alignment:
Q  150 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaa 207  Q
    |||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||    
T  9521936 taaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgatttgttaa 9521879  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 23499493 - 23499433
Alignment:
Q  152 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgt 212  Q
    ||||||||||||||||||| || | |||||||  ||||||||||||||||||||| |||||    
T  23499493 aagtgtaaagtgagaaaattaagggttgttattttaacaaactcatgatttgttatgatgt 23499433  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 31389124 - 31389187
Alignment:
Q  151 aaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    ||||||||||||||| ||||||| | |||||||   || ||||||||||||||||| |||||||    
T  31389124 aaagtgtaaagtgagcaaatcaagggttgttatttaaataaactcatgatttgttaggatgtac 31389187  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 30969761 - 30969817
Alignment:
Q  150 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgatttgtta 30969817  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 19267429 - 19267362
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||||    
T  19267429 gagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgatttgttatgatgtac 19267362  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 37757572 - 37757518
Alignment:
Q  152 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||    
T  37757572 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgtta 37757518  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 37763320 - 37763266
Alignment:
Q  152 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||    
T  37763320 aagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgtta 37763266  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 38603013 - 38603072
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    |||| ||||||||||  |||||||||| | |||||||  |||||||||||||||||||||    
T  38603013 gagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgatttgtta 38603072  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 34383410 - 34383344
Alignment:
Q  150 taaagtgtaaagtgagaaaa-tcaaagattgttatcgtaacaaactcatgatttgttaagatgtaca 215  Q
    |||||| |||| |||||||| ||||| ||||| || |||||||||||||||||||||| ||| ||||    
T  34383410 taaagtttaaaatgagaaaaatcaaatattgtcattgtaacaaactcatgatttgttatgatataca 34383344  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 14536123 - 14536191
Alignment:
Q  146 cgagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||||| |||||||    
T  14536123 cgagtgaagtgtaaagtgagaaaatcaaaggttgttattgcaacaaactcgtgatttgttatgatgtac 14536191  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 14518629 - 14518693
Alignment:
Q  150 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    ||||||||||||||||||||||||  ||||||||  ||| ||||||||||||||||| |||||||    
T  14518629 taaagtgtaaagtgagaaaatcaagaattgttattataagaaactcatgatttgttatgatgtac 14518693  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 5736388 - 5736450
Alignment:
Q  150 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgt 212  Q
    |||||||||||||||||||||||| | ||||||| |||| ||| | ||||||||||| |||||    
T  5736388 taaagtgtaaagtgagaaaatcaatggttgttattgtaagaaattaatgatttgttatgatgt 5736450  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 39421524 - 39421595
Alignment:
Q  152 aagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtacatgtaatat 223  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||| | ||||| | ||||||    
T  39421524 aagtgtaaagtgagaaaatcaaaggttgttattttaacaaactcatgatttgttatggtgtacttctaatat 39421595  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 51672465 - 51672531
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgta 213  Q
    |||| |||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||    
T  51672465 gagttaagtgtaacgtgagaaaatcaaaggttgttattgtatcaaactcatgatttgttatgatgta 51672531  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 18280539 - 18280482
Alignment:
Q  157 taaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgtac 214  Q
    ||||||||||||||||| | ||||||| |||||| | | ||||||||||| |||||||    
T  18280539 taaagtgagaaaatcaagggttgttattgtaacatatttatgatttgttatgatgtac 18280482  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 1070788 - 1070725
Alignment:
Q  150 taaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgttaagatgta 213  Q
    ||||||||||||||| ||||| || | |||||||| ||||||| ||||||||||||||||||||    
T  1070788 taaagtgtaaagtgaaaaaataaaggtttgttatcataacaaattcatgatttgttaagatgta 1070725  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 39736734 - 39736684
Alignment:
Q  156 gtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  39736734 gtaaagtaagaaaatcaaaggttgttatggtaacaaactcatggtttgtta 39736684  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 41417151 - 41417208
Alignment:
Q  146 cgagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttg 203  Q
    |||| |||||||||||| |||||||||| | ||||||| ||||||||||| |||||||    
T  41417151 cgagaaaagtgtaaagtaagaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 1815612 - 1815573
Alignment:
Q  157 taaagtgagaaaatcaaagattgttatcgtaacaaactca 196  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  1815612 taaagcgagaaaatcaaagattcttatcgtaacaaactca 1815573  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 18345704 - 18345763
Alignment:
Q  147 gagtaaagtgtaaagtgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 206  Q
    ||||||||| ||||||  ||||||||| | ||||||| | ||||||||||||||||||||    
T  18345704 gagtaaagtataaagtacgaaaatcaagggttgttattgcaacaaactcatgatttgtta 18345763  T

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