View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_52 (Length: 227)
Name: NF18380_low_52
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 36913635 - 36913442
Alignment:
| Q |
25 |
ttaaggattgcctacctctgtattgtaaatttgtaatgtcatcgacatcgttgtgttgtgcatggtgtggttttgtgatttcttattcttatgattgatt |
124 |
Q |
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| T |
36913635 |
ttaaggattgcctacctctgtattgtaaatttgtaatgtcatcgacatcgttgtgttgtgcatggtgtggttttgtgatttcttattcttatgattgatt |
36913536 |
T |
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| Q |
125 |
gaacggatgacaagctaagcatgctctccataattattcctagaattaagacgtattataattaattcctagaggtgagaaggaaaaaatatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36913535 |
gaacggatgacaagctaagcatgctctccataattattcctagaattaagacgtattataattaattcctagaggtgagaaggaaaaaatatat |
36913442 |
T |
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