View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_55 (Length: 212)
Name: NF18380_low_55
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 39558279 - 39558463
Alignment:
| Q |
18 |
agattgttgcttggctcttggagtgtcgaataattggagcttttctattgtatatattgaagggaaataatcttattcataaggtatgctcttgttctat |
117 |
Q |
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| T |
39558279 |
agattgtcgcttggctcttggagtgtcgaataattggagcttttctattgtatatattgaagggaaataatcttattcataaggtatgctcttgttctat |
39558378 |
T |
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| Q |
118 |
agtcacttgcattctattttcatgaaattgtgttctgattcaagaacaaattttcaccttgctttcgcacttcccctatgcttct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39558379 |
agtcacttgcattctattttcatgaaattgtgttctgattcaagaacaaattttcaccttgctttcgcacttcccatatgtttct |
39558463 |
T |
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