View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_59 (Length: 204)
Name: NF18380_low_59
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 21244930 - 21244758
Alignment:
| Q |
16 |
caatcacatggcttcccattggaaaatttaccaaatctccaatgttctagtttaattcaattcctggaacaattcagttaatatatataattggtactcc |
115 |
Q |
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| T |
21244930 |
caatcacatggcttcccattggaaaatttaccaaatctccaatgttctagtttaatccaattcctggaacaattcagttaatatatataattggtactcc |
21244831 |
T |
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| Q |
116 |
aacgttgaaatgtgggcannnnnnnnattttcttgttcatctttgttcttttagattcagtgatcttgttcatt |
189 |
Q |
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||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21244830 |
aacgttgaagtatgggca-tttttttattttcttgttcatctttgttcttttcgattcagtgatcttgttcatt |
21244758 |
T |
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