View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18380_low_6 (Length: 505)
Name: NF18380_low_6
Description: NF18380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18380_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 130 - 494
Target Start/End: Original strand, 30099831 - 30100194
Alignment:
| Q |
130 |
aagatatgtaataaacaaatgaaaatttctannnnnnn-ctaaatagcttaataagcaannnnnnngcaattaattaggatgagttggatgatgagagtg |
228 |
Q |
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| T |
30099831 |
aagatatgtaataaacaaatgaaaatttctattttttttctaaatagcttaataagca--ttttttgcaattaattaggatgagttggatgatgagaatg |
30099928 |
T |
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| Q |
229 |
aggaggatgagtctcttggatataggaatttgatttctattcatgctgggaaaccaaaaggtaatgtggaacattggttgatggaacatgatcaagttag |
328 |
Q |
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| T |
30099929 |
aggaggatgagtctcttggatataggaatttgatttctattcatgctgggaaaccaaaaggtaatgtggaacactggttgacggaacatgatcaagttag |
30100028 |
T |
|
| Q |
329 |
gcgtcttagcttgagtgagcaagttcttgaagatattgtcaaaactcaaggatctgaaatcgtcaggtgattttaaatatatttttggttgatcgtattg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
30100029 |
gcgtcttagcttgagtgagcaagttcttgaagatatcgtcaaaactcaaggatctgaaattgtcaggtgattttaaatgtatttttggttgatcgtattg |
30100128 |
T |
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| Q |
429 |
ttgaacctcaataattttaatttagttagtcgactcgtaagagtgtgaaactctctcaacacctat |
494 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30100129 |
ttgaacctcaataattttaatttagttaatcgactcgtaagagtgtgaaactctctcaacacctat |
30100194 |
T |
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