View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_high_11 (Length: 285)
Name: NF18381_high_11
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 54 - 263
Target Start/End: Complemental strand, 44693437 - 44693228
Alignment:
| Q |
54 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
153 |
Q |
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| T |
44693437 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
44693338 |
T |
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| Q |
154 |
gcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693337 |
gcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
44693238 |
T |
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| Q |
254 |
caactatctc |
263 |
Q |
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|||||||||| |
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| T |
44693237 |
caactatctc |
44693228 |
T |
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