View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18381_high_12 (Length: 278)
Name: NF18381_high_12
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 41876537 - 41876275
Alignment:
| Q |
1 |
atagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatattttattttaccatgtaaaatttccgagacatgctcggagcccgtctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41876537 |
atagaaaattcgacaagttaatcgtaagaccacaaaaatttattgcaaaatatttgattttaccatgtaaaatttccgagacatgctcggagcccatctg |
41876438 |
T |
|
| Q |
101 |
ctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaataga |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41876437 |
ctatggtattgacctcaggcaatgttattatcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaataga |
41876338 |
T |
|
| Q |
201 |
cgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattttcat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876337 |
cgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattttcat |
41876275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 263
Target Start/End: Original strand, 40867588 - 40867791
Alignment:
| Q |
60 |
ttaccatgtaaaatttccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgca |
159 |
Q |
| |
|
||||||||| |||| ||| ||| ||||||| |||||||| ||||| |||||| ||| |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
40867588 |
ttaccatgtgaaatctccaagaaatgctcgtagcccgtcagctatagtattggtctcgggcaatgttattatccttccagctgctttagattgtgctgcg |
40867687 |
T |
|
| Q |
160 |
tcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattt |
259 |
Q |
| |
|
||||| | ||||| || |||||||||||||| ||||| | |||||| || | ||||||||| ||||||||||| ||| || |||||| ||| || ||| |
|
|
| T |
40867688 |
tcatcggcccctttaggttcagcagccaaaatacgaatggccgggttgatagacttggcagccaatgctactcctgatatcaaaccacctcctgcagttt |
40867787 |
T |
|
| Q |
260 |
tcat |
263 |
Q |
| |
|
|||| |
|
|
| T |
40867788 |
tcat |
40867791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 24800358 - 24800462
Alignment:
| Q |
125 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
224 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
24800358 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24800457 |
T |
|
| Q |
225 |
tgcta |
229 |
Q |
| |
|
||||| |
|
|
| T |
24800458 |
tgcta |
24800462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 24817434 - 24817538
Alignment:
| Q |
125 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
224 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
24817434 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24817533 |
T |
|
| Q |
225 |
tgcta |
229 |
Q |
| |
|
||||| |
|
|
| T |
24817534 |
tgcta |
24817538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 9735930 - 9736090
Alignment:
| Q |
75 |
tccgagacatgctcggagcccgtctgctatggtattgacctcaggcagtgttattatcctcccagctgctttagattgcgctgc--atcatcaactcctt |
172 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| |||| | |||||||| | |||||||||||| | || |||||||||| ||| ||||||| |||||| |
|
|
| T |
9735930 |
tccgagaaatgctcgaagcctgtctgctataatatttatctcaggcaattttattatcctccttgttgtcttagattgcgatgcatatcatcagctcctt |
9736029 |
T |
|
| Q |
173 |
ttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcc |
233 |
Q |
| |
|
| |||||||| ||||||| | ||||| || |||||| || |||||||||| ||||||||| |
|
|
| T |
9736030 |
tatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcc |
9736090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University