View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_high_2 (Length: 601)
Name: NF18381_high_2
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 41637197 - 41637593
Alignment:
| Q |
18 |
gaaaccaacaatttctttcctatgttacaaccctcaactagttccattcttctttcctcactgttttggaacgaggaagtcttcacttcttctgtgtttg |
117 |
Q |
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| T |
41637197 |
gaaaccaacactttctttcctatgttacaaccctcaactagttccattcttctttcctcactgttttggaacgaggaagtcttcacttcttctgtgtttg |
41637296 |
T |
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| Q |
118 |
gattatcgatattcaaataaaaaatccttacgttatcttagttctacttctgataatctgaaatccatgaacgacttgttggtaggggataaatcactat |
217 |
Q |
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| T |
41637297 |
gattatcgatattcaaataaaaaatccttacgttatcttagttctacttctgataatctgaaatccatgaacgaattgttggtaggggataaatcactat |
41637396 |
T |
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| Q |
218 |
acggtcttggtgaagat--gatgtggtcattatgcttgatgatgagaggttgaatccaacctcaccaatggttcttaacaaactagaggacatgatctta |
315 |
Q |
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| T |
41637397 |
acggtcttagtgaagatgcgatgtggtcattatgcttgatgatgagaggttgaatccaacctcaccaatggttcttaacaaactagaggacatgatctta |
41637496 |
T |
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| Q |
316 |
gccatggaagatggagattgcatattgttctacttttgtggccatggtggccgctacaaagtaaaacaatggtctaacaacacataacatcaccaca |
412 |
Q |
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| T |
41637497 |
gccatggaagatggagattgcatattgttctacttttgtggccatggtggccgctacaaagtaaaacaatggtctaacaacacataacatcaccaca |
41637593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 410 - 589
Target Start/End: Original strand, 41637754 - 41637933
Alignment:
| Q |
410 |
acatgtagagtgtatatgtcttccgtccgcatgaaggcgactacatcactggtgggttaagcttgtttgatttgacaaaaatatcaaattgtatcttgtt |
509 |
Q |
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| T |
41637754 |
acatgtagagtgtatatgtcttccgtccgcatgaaggcgactacatcactggtgggttaagcttgtttgatttgacaaaaatatcaaattgtatcttgtt |
41637853 |
T |
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| Q |
510 |
tattcgttggctgattactatgtgtatagaattggagtttatttaatattgtnnnnnnnttattttccctcatattcttg |
589 |
Q |
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| T |
41637854 |
tattcgttggctgattactatgtgtatagaattggagtttatttaatatgataaaaaaattattttccctcatattcttg |
41637933 |
T |
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