View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_high_6 (Length: 402)
Name: NF18381_high_6
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 42337036 - 42336654
Alignment:
| Q |
1 |
tatttacatttgttaatcatgcacaaccgctctgtgtattttggccacgtgttggctttgtatgcttttccagcttttttgttggacaacttatttcttt |
100 |
Q |
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| T |
42337036 |
tatttacatttgttaatcatgcacaaccgctctgtgtattttggccatgtgttggctttgtatgcttttccagcttttttgttggacaacttatttctct |
42336937 |
T |
|
| Q |
101 |
gtttgcttccgacaaaaattatatcgtgccaaatagcactgcatataagaattatatttggccctctccnnnnnnncgaattataattggatgtatgtgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42336936 |
gtacgcttccgacaaaaattatatcgtgccaaatagcactgcatataagaattatatttggccctctccaaaaaaacgaattataattggatgtatgtgt |
42336837 |
T |
|
| Q |
201 |
ttcatgaggtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttttatttttggggtatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42336836 |
ttcatgaggtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttt--attttggggtatac |
42336739 |
T |
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| Q |
301 |
ttcctttaataataattattctaatacaccctcgtagtcgagactatatctaagatcatcaaaaagttgcaatgtaagtctcttt |
385 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336738 |
ttcctttaataataattattctaatacacccttgtagtcgagactatatctaagatcatcaaaaagttgcaatgtaagtctcttt |
42336654 |
T |
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