View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_high_8 (Length: 394)
Name: NF18381_high_8
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 243754 - 243977
Alignment:
| Q |
7 |
attcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgctcataatatggtaattaaagtgtttatgctcataaattagtgaatttgc |
106 |
Q |
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| T |
243754 |
attcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgctcataatatggtaattaaagtgtttatgctcataaattagtgaatttgc |
243853 |
T |
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| Q |
107 |
aaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaatttggtttatgatagaggttgacaaaaacattccctcttaatttccaactt |
206 |
Q |
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| T |
243854 |
aaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaatttggtttatgatagaggttgacaaaaacattccctcttaatttccaactt |
243953 |
T |
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| Q |
207 |
ttttctatattccattccacacac |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
243954 |
ttttctatattccattccacacac |
243977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 261 - 384
Target Start/End: Original strand, 244008 - 244131
Alignment:
| Q |
261 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244008 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
244107 |
T |
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| Q |
361 |
acacaagagtaaatcatattcatc |
384 |
Q |
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|||||||||||||||||||||||| |
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| T |
244108 |
acacaagagtaaatcatattcatc |
244131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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