View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_low_10 (Length: 299)
Name: NF18381_low_10
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 48708198 - 48707934
Alignment:
| Q |
18 |
agtatatcatcaaaaaatgcacacaatggtttgtgaacaaatgctatttgattaatgtttgattaatgtttgagatatactaaaccatatatatata--g |
115 |
Q |
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| T |
48708198 |
agtatatcatcaaaaaatgcacacaatggtttgtgaacaaatgctatttgattaatgtttga-----------gatatactaaaccatatatatatatag |
48708110 |
T |
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| Q |
116 |
tagtggtaactggtaagtaactgtttccgatcgatatcattgaggttcaggctcggaatgagttaaaaccattgtagtttaataataacattaacacttt |
215 |
Q |
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| T |
48708109 |
tggtggtaactggtaagtaactgtttccgatcgatatcattgaggttcaggctcggaatgagttaaaaccattgtagtttaataataacattaacacttt |
48708010 |
T |
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| Q |
216 |
cataatcatctgcatcatcactgatctggagccaactttgtcgaagaagaatatttgtgatttctgcatctctgct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48708009 |
cataatcatctgcatcatcactgatctggagccaactttgtcgaagaagaatatttgtgatttctgcatctctgct |
48707934 |
T |
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