View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_low_11 (Length: 292)
Name: NF18381_low_11
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 12709217 - 12709069
Alignment:
| Q |
12 |
aaatttggtgacaggttgaaaaatgatggtgctc--acagaataaaattagaatgtctgaggaaaattctttgatattctgttttgagaaatttgtgatt |
109 |
Q |
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| T |
12709217 |
aaatatggtgataggtggaaaaatgaatgtgctcgtaaagactaaaattagactgtctgaggagaaatctttgatattctgttttgagaaatttgtgatt |
12709118 |
T |
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| Q |
110 |
gcaatatttttggaggacacatttaagactgatatattccctttctcct |
158 |
Q |
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| T |
12709117 |
ggcaaatttgtggaggacacttttaagactgatttattccctttctcct |
12709069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 12708947 - 12708862
Alignment:
| Q |
194 |
cacaaagactgtaccagtcctgaaattatttcaaacaattttagaatagtaaactacgcgtgcacttatctacgaacatatatatt |
279 |
Q |
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| T |
12708947 |
cacaaacactgttccagtcctgaaattatttcaaacaattgtagaaaaggaaacgccgcgtgcacttatctacgaacatatatatt |
12708862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 19714578 - 19714737
Alignment:
| Q |
1 |
taaagaaacaaaaatttggtgacaggttgaaaaatgatggtgctcaca--gaataaaattagaatgtctgaggaaaattctttgatattctgttttgaga |
98 |
Q |
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| T |
19714578 |
taaagaaacaaaaatttggtgacaggtggagaaatgagtgtgctcataaagacaaaagttagaatgtctgaggagaattctttgatattcgggtttgaga |
19714677 |
T |
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| Q |
99 |
aatttgtgattgcaatatttttggaggacacatttaagactgatatattccctttctcct |
158 |
Q |
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| T |
19714678 |
aatttgtgattggcatatttttggaggaaactttcaagactgatattttctcattctcct |
19714737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 19714873 - 19714958
Alignment:
| Q |
194 |
cacaaagactgtaccagtcctgaaattatttcaaacaattttagaatagtaaactacgcgtgcacttatctacgaacatatatatt |
279 |
Q |
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| T |
19714873 |
cacaaacactgttccagttctgaaattatttcaaacaattgtgggaaagtaaactccgattgcacttatctacgaaaatatatatt |
19714958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 19714799 - 19714829
Alignment:
| Q |
165 |
aatagctaatttctaaactggatgaacctca |
195 |
Q |
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| T |
19714799 |
aatagctaatttctaaactggatgaacctca |
19714829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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