View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_low_3 (Length: 573)
Name: NF18381_low_3
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 20046940 - 20046394
Alignment:
| Q |
10 |
acatcatcacatccgcacattaatttcccatttaacatatctacagcttgaaatgaccctccaccgtcacttctctgcatcaaatttcaaatgacattgg |
109 |
Q |
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| T |
20046940 |
acatcatcacatccacacattaatttcccatttaacatatctacagcttgaaatgaccctccaccgtcacttctctgcatcaaatttcaaatgacattgg |
20046841 |
T |
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| Q |
110 |
atgtcaagatatataaaatgtcggccaacctacaataaaacaaagtagaagattttaccttgtaataatcaactgcaacaaaatttgcccagcgattacc |
209 |
Q |
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| T |
20046840 |
atgtcaagatatataaaatgtcggccaacctacaataaaacaaagtagaagattttaccttgtaataatcaactgcaacaaaatttgcccagcgattacc |
20046741 |
T |
|
| Q |
210 |
agctgcggc-ataacaagtagaaagcatatttattaggtgttttgaattatctttacatgtagcttgatggattggaattgttctaaagtgatttactaa |
308 |
Q |
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| T |
20046740 |
agctgcggctataacaagtagaaagcatatttattaggtgttttgaattatctttacatgtagcttgttggattggaattgttctaaagtgatttactaa |
20046641 |
T |
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| Q |
309 |
aaccaaagatttgcttctatcattgagtgcagatgaatctgcacggttagggcattttccatgaaccattccattcttcccatctgcactcatatataaa |
408 |
Q |
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| T |
20046640 |
aaccaaagatttgcttctatcattgagtgcagatgaatctacacggttagggcattttccatgaaccattccattcttcccatctgcattcatatataaa |
20046541 |
T |
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| Q |
409 |
cataacattaatgcaatattagaaagtattctcgacaaaagaaatatggcgctagatattcaaatgttgcttacattgattttcaaccatatagttccac |
508 |
Q |
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| T |
20046540 |
cataacattaatgcaatattagaaagtattctcgacaaaagaaatatagcgctagatattcaaatgttgcttacattgattttcaaccatatagttccac |
20046441 |
T |
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| Q |
509 |
tgataagctattccttcactttgttccttgttcttctgagagccaaa |
555 |
Q |
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| T |
20046440 |
tgataagctattccttcactttgttccttgttcttctgagagccaaa |
20046394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 6109329 - 6109282
Alignment:
| Q |
478 |
cttacattgattttcaaccatatagttccactgataagctattccttc |
525 |
Q |
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| T |
6109329 |
cttacattcattttcaatcatgtacttccactgataagctattccttc |
6109282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 4882256 - 4882316
Alignment:
| Q |
478 |
cttacattgattttcaaccatatagttccactgataagctattccttcactttgttccttg |
538 |
Q |
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| T |
4882256 |
cttacactgattttcaaccatgtaattccactggtaagcaatgccttcactttgttccttg |
4882316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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