View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18381_low_4 (Length: 453)

Name: NF18381_low_4
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18381_low_4
NF18381_low_4
[»] chr4 (2 HSPs)
chr4 (116-435)||(24725291-24725610)
chr4 (19-116)||(18025588-18025685)
[»] chr1 (1 HSPs)
chr1 (12-118)||(21464586-21464692)
[»] scaffold0125 (1 HSPs)
scaffold0125 (14-116)||(35690-35792)
[»] chr8 (1 HSPs)
chr8 (12-116)||(17833337-17833441)
[»] chr6 (2 HSPs)
chr6 (16-116)||(19324540-19324640)
chr6 (254-291)||(8837825-8837862)
[»] scaffold0553 (1 HSPs)
scaffold0553 (18-116)||(7670-7768)
[»] chr3 (1 HSPs)
chr3 (19-116)||(14674362-14674459)
[»] chr7 (2 HSPs)
chr7 (46-116)||(9016825-9016895)
chr7 (46-101)||(10608503-10608558)
[»] chr2 (1 HSPs)
chr2 (389-425)||(17342510-17342546)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 116 - 435
Target Start/End: Complemental strand, 24725610 - 24725291
Alignment:
Q  116 gtatcatgacattaaatgattgaataatgatttatatccaacaaaattataaagtattttcaatctcgtaagttannnnnnnnacaaagttttcaatctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  24725610 gtatcatgacattaaatgattgaataatgatttatatccaacaaaattataaagtattttcaatctcgtaagttatattttttacaaagttttcaatctc 24725511  T
Q  216 gtaacttgtaactttaattaaaggattccattatcgggaatggtatcgatatagaatgtgaatataaaaagtgatggtgaatagagtgagaatagtagta 315  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24725510 gtaacttgtaactttaattaaaggattccattatcggtaatggtatcgatatagaatgtgaatataaaaagtgatggtgaatagagtgagaatagtagta 24725411  T
Q  316 cctcttcttctgaagatgaaatggaaatgtagcagtatcatgtagttttatgaatgaagcaatcgttgcactgtcttcatgtgaagctgaatatattgca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  24725410 cctcttcttctgaagatgaaatggaaatgtagcagtatcatgtagttttatgaatgaagcaattgttgcactgtcttcatgtgaagctgaatatattgcg 24725311  T
Q  416 gcttctatggatgtccgtca 435  Q
    ||||||||||||||||||||    
T  24725310 gcttctatggatgtccgtca 24725291  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 18025588 - 18025685
Alignment:
Q  19 aaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagtagg 116  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18025588 aaacagaaaaagaaaccacagactccaacaagttaaggaagcctgtaattaggaagcctgcatcgatcccgaaagaattctagatacaaatcagtagg 18025685  T

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Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 21464692 - 21464586
Alignment:
Q  12 acagaaaaaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatca 111  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21464692 acagaaaaaacagaaaatgaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagattcaaatca 21464593  T
Q  112 gtaggta 118  Q
    |||||||    
T  21464592 gtaggta 21464586  T

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Target: scaffold0125 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 35690 - 35792
Alignment:
Q  14 agaaaaaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagt 113  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35690 agaaaaaacagaaaaagaaacaacagactccgacaacttaaggaagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagt 35789  T
Q  114 agg 116  Q
    |||    
T  35790 agg 35792  T

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Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 17833441 - 17833337
Alignment:
Q  12 acagaaaaaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatca 111  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  17833441 acagaaaaaacagaagaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatataggtacaaatca 17833342  T
Q  112 gtagg 116  Q
    |||||    
T  17833341 gtagg 17833337  T

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Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 19324640 - 19324540
Alignment:
Q  16 aaaaaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagtag 115  Q
    ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  19324640 aaaaaacagaaaaagaggcaacagactccgacaagttaaggtagcctgtaattaggaagcctgcatcgatcccgaaaaaaatctagatacaaatcagtag 19324541  T
Q  116 g 116  Q
    |    
T  19324540 g 19324540  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 8837825 - 8837862
Alignment:
Q  254 aatggtatcgatatagaatgtgaatataaaaagtgatg 291  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  8837825 aatggtatagatatagaatgtgaatatgaaaagtgatg 8837862  T

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Target: scaffold0553 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 7670 - 7768
Alignment:
Q  18 aaaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagtagg 116  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7670 aaaacagaaaaagaaaccacagactccaacaagttaaggaagcctgtaattaggaagcctgcatcgatcccgaaagaaatctagatacaaatcagtagg 7768  T

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Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 14674362 - 14674459
Alignment:
Q  19 aaacaggaaaagaaacaacagactccgacaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagtagg 116  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  14674362 aaacagaaaaagaaaccacagactccaacaagttaaggaagcctgtaattaggaagcctgcatcgatcccgaaagaattctagatacaaatcagtagg 14674459  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 9016895 - 9016825
Alignment:
Q  46 acaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctagatacaaatcagtagg 116  Q
    |||| |||||| |||||||||||||||||||| |||| |||  ||||||||||||||  ||||||||||||    
T  9016895 acaaattaaggaagcctgtaattaggaagcccacatctatcgggaaagaaatctagactcaaatcagtagg 9016825  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 10608503 - 10608558
Alignment:
Q  46 acaagttaaggtagcctgtaattaggaagcccgcatcgatcccgaaagaaatctag 101  Q
    |||| |||||| |||||||||||||||||||  |||| ||| ||||||||||||||    
T  10608503 acaaattaaggaagcctgtaattaggaagcctacatctatcacgaaagaaatctag 10608558  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 17342510 - 17342546
Alignment:
Q  389 tcttcatgtgaagctgaatatattgcagcttctatgg 425  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  17342510 tcttcttgtgaagctgaatacattgcagcttctatgg 17342546  T

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