View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18381_low_5 (Length: 423)
Name: NF18381_low_5
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18381_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 32 - 409
Target Start/End: Complemental strand, 1095824 - 1095441
Alignment:
| Q |
32 |
agtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatacaca |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1095824 |
agtagctggaactgaaacaatgaaaacaaatatatacgaaggagaagctcagcataatttcaggtcaaaatcccaacccctttttataataacatacaca |
1095725 |
T |
|
| Q |
132 |
tcttccaaatactccaatatatccctgcaacctaagtaaaatcaaaagaaaacaatttatcaaaagataa------aagattcacaacatcaatcttgaa |
225 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
1095724 |
tctttcaaatactccaatatgtccctgcaacctaagtaaaatcaaaagaaaacaatttatcaaaagaaaacaattcaagattcacaacatcaatcttgaa |
1095625 |
T |
|
| Q |
226 |
tgtcatatcatgatcataatcgacactgatcgtcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacac |
325 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095624 |
tgtcatctcatgatcataatcgacactgatcgtcaactttcttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacac |
1095525 |
T |
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| Q |
326 |
aattctaactcttgtaaattagggcacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaactatt |
409 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1095524 |
aattctaactcttgtaaattagggcacccagaaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaactatt |
1095441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 9891438 - 9891605
Alignment:
| Q |
34 |
tagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatacacatc |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9891438 |
tagctggaactgaaacaatgaaaacaaatatatacgaacgagcagctcagcataatttcaggtcaaaatcccaacccctctctataataacatacacatc |
9891537 |
T |
|
| Q |
134 |
ttccaaatactccaatatatccctgcaacctaagtaaaatc-aaaagaaaacaatttatcaaaagata |
200 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
9891538 |
ttccaaatactccaatatgtccccacaaccaaagtaaaatcaaaaagaaaacaatttatcaaaagata |
9891605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 31237012 - 31237136
Alignment:
| Q |
32 |
agtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaaatcccaacccctctttataataacatacaca |
131 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
31237012 |
agtagctgggactgaaacaatgaaaacaaatatatacgaatgagtacctcagcataatttcaggtcaaaatcccaacccctatctataataacatacaca |
31237111 |
T |
|
| Q |
132 |
tcttccaaatactccaatatatccc |
156 |
Q |
| |
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|||||||||||||| ||||| |||| |
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| T |
31237112 |
tcttccaaatactcaaatatgtccc |
31237136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 31253631 - 31253742
Alignment:
| Q |
32 |
agtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttca-ggtcaaaatccca-acccctctttataataacataca |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||| |||||| |||||| |||||| ||||| || |||||||||| ||| |
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| T |
31253631 |
agtagctggaactgaaacaatgaaaacaattatatatgaatgagcagctcagcataatttcagggtcaagatcccagaccccactctataataacaaaca |
31253730 |
T |
|
| Q |
130 |
catcttccaaat |
141 |
Q |
| |
|
|||||||||||| |
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| T |
31253731 |
catcttccaaat |
31253742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 407
Target Start/End: Original strand, 31268552 - 31268698
Alignment:
| Q |
258 |
tcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacacaattctaactcttgtaaattagggcacccata |
357 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||| |||| || |||| ||||||||||| || ||||||| | |
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| T |
31268552 |
tcaacttccgtaatgtggaaattgcaacactgatctgctttatgttctcccaataa---caattgtaccattccaactcttgtaagacagagcacccaga |
31268648 |
T |
|
| Q |
358 |
aaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
407 |
Q |
| |
|
|||||| |||||| || |||||||| | ||| ||||||||||||||| |
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| T |
31268649 |
gaaaagtcattgaactgacttctcattagcaaacataacatctgaaacta |
31268698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 31255900 - 31255957
Alignment:
| Q |
350 |
cacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
407 |
Q |
| |
|
|||||| ||||||| ||||||| || |||||||||| |||||||||||||||||||| |
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| T |
31255900 |
cacccagaaaaaagacgttgaactgacttctcatttgcaaaggtaacatctgaaacta |
31255957 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 31239385 - 31239460
Alignment:
| Q |
332 |
aactcttgtaaattagggcacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
407 |
Q |
| |
|
||||||||||| || ||| ||| |||||||| |||||| || |||||||||| |||||||||||||||||||| |
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| T |
31239385 |
aactcttgtaagacagagcatccagaaaaaagtcgttgaaatgacttctcatttgcaaaggtaacatctgaaacta |
31239460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 407
Target Start/End: Complemental strand, 16131214 - 16131060
Alignment:
| Q |
250 |
actgatcgtcaacttccttaatgtgcaaattttaacactgatctgctttatattctcccaataataacaataacacaattctaactcttgtaaattaggg |
349 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | |||||||||| |||| | ||| || ||||||||||| |||| |
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| T |
16131214 |
actgatggtcaacttccttaatgtggaaattgagagactaatctggtttatgtgctcccaataa---caattatccaactccaactcttgtaagacaggg |
16131118 |
T |
|
| Q |
350 |
cacccataaaaaagttgttgaaccgagttctcatttgaaaaggtaacatctgaaacta |
407 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||| ||||||||||| || ||||| |
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|
| T |
16131117 |
cacccagagaaaagttgttgagccgagttctcatttgcaaaggtaacatttgtaacta |
16131060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 16131285 - 16131233
Alignment:
| Q |
194 |
aaagataaaagattcacaacatcaatcttgaatgtcatatcatgatcataatc |
246 |
Q |
| |
|
||||||| |||||||||| |||||||||||| | ||||| |||||||||||| |
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|
| T |
16131285 |
aaagatagaagattcacagcatcaatcttgagtttcataatatgatcataatc |
16131233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 442443 - 442341
Alignment:
| Q |
32 |
agtagctggaactgaaacaatgaaaacaaatatatacgaacgagaagctcagcatgatttcaggtcaaa-atcccaa-cccctctttataataacataca |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||| ||||||| ||||||| |||||||||| ||| |
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|
| T |
442443 |
agtagctggaactgaaacaatgaaaagaaatt---------gagaagctcagcataatttcagggcaaagatcccaaacccctctctataataacacaca |
442353 |
T |
|
| Q |
130 |
catcttccaaat |
141 |
Q |
| |
|
||||||||||| |
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|
| T |
442352 |
tatcttccaaat |
442341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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