View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18381_low_6 (Length: 414)

Name: NF18381_low_6
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18381_low_6
NF18381_low_6
[»] chr1 (5 HSPs)
chr1 (15-395)||(29449282-29449653)
chr1 (21-213)||(29462304-29462490)
chr1 (216-284)||(29462215-29462283)
chr1 (241-315)||(29444247-29444321)
chr1 (241-315)||(29454254-29454328)
[»] chr2 (6 HSPs)
chr2 (21-315)||(9363451-9363762)
chr2 (241-315)||(12019793-12019867)
chr2 (241-315)||(11988326-11988400)
chr2 (241-311)||(12007150-12007220)
chr2 (168-216)||(9069069-9069117)
chr2 (219-319)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (219-315)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (252-316)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 29449653 - 29449282
Alignment:
Q  15 cacagatgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatt 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29449653 cacagatgagatctttgtcacacttctattggccttttctttcaccaaaggtcatccccattcacaattccacggggaatggatcccctcgtgtgagatt 29449554  T
Q  115 tttacacaagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaac 214  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449553 tttacacaagagagaagtgtgat----gtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaac 29449458  T
Q  215 cactagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449457 cactagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatc 29449358  T
Q  315 cttgtnnnnnnnnncacatgaatatcatataagtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgt 395  Q
    |||||         |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  29449357 cttgt-aaaaaaaacacatgaatatcatataagtaaactcaacaaattagctagtca----catgggccgaatgtccatgt 29449282  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 29462490 - 29462304
Alignment:
Q  21 tgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatttttaca 120  Q
    ||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||||  || || |||||||||| |||||||||||||||    
T  29462490 tgagatctttgtcacacttttgtaggccttt-ctttcaccataggtcatccccattcataattccaccggaaacggatcccctcatgtgagatttttaca 29462392  T
Q  121 caagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 213  Q
    | |||||||||| ||    |||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462391 cgagagagaagt-tg----atgtcataccatttcagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  216 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 284  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  241 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 315  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  241 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 315  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 9363451 - 9363762
Alignment:
Q  21 tgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatg-----gggaatggatcccctcgtgtgagattt 115  Q
    ||||||||||||  |||||| || ||||||| ||| ||||| ||||||||||||||||| |||| ||      |||||||||||||||| ||||||||||    
T  9363451 tgagatctttgtggcacttcagtaggccttt-cttccaccataggtcatccccattcacgattcgattccaccgggaatggatcccctcatgtgagattt 9363549  T
Q  116 ttacacaagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaacc 215  Q
    ||  ||| ||||||||||||     |||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||  |||||| | ||||    
T  9363550 tt--acatgagagaagtgtg----gtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactcttcccgctaacc 9363643  T
Q  216 a-------------------ctagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatcc 296  Q
    |                    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | ||||||||||    
T  9363644 aaggtgactcattccgtcgcttagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatcc 9363743  T
Q  297 ttggtacaagaagtcatcc 315  Q
    |||| ||||||||||||||    
T  9363744 ttgggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  241 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 315  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  241 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 315  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  241 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 311  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  168 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 216  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  219 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 318  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  319 t 319  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  219 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 315  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  252 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 316  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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