View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18381_low_8 (Length: 396)

Name: NF18381_low_8
Description: NF18381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18381_low_8
NF18381_low_8
[»] chr5 (10 HSPs)
chr5 (94-392)||(38629036-38629333)
chr5 (92-307)||(38600496-38600711)
chr5 (112-202)||(3955830-3955920)
chr5 (15-57)||(38629386-38629428)
chr5 (94-155)||(6228396-6228459)
chr5 (163-202)||(18282546-18282585)
chr5 (104-196)||(9050999-9051091)
chr5 (94-158)||(26647214-26647278)
chr5 (94-158)||(26917757-26917821)
chr5 (94-158)||(26918798-26918862)
[»] chr1 (5 HSPs)
chr1 (111-200)||(42560943-42561032)
chr1 (112-196)||(25788699-25788783)
chr1 (127-200)||(42617345-42617418)
chr1 (111-158)||(40368061-40368108)
chr1 (115-155)||(15883239-15883279)
[»] chr8 (3 HSPs)
chr8 (326-392)||(38746269-38746335)
chr8 (94-200)||(29005516-29005622)
chr8 (111-151)||(15920055-15920095)
[»] chr7 (6 HSPs)
chr7 (104-202)||(5357342-5357440)
chr7 (111-202)||(24650270-24650361)
chr7 (111-158)||(10040847-10040894)
chr7 (112-153)||(35791938-35791979)
chr7 (111-151)||(3584134-3584174)
chr7 (94-158)||(14734490-14734553)
[»] chr3 (7 HSPs)
chr3 (113-199)||(1338122-1338208)
chr3 (326-392)||(54402229-54402295)
chr3 (111-192)||(28247302-28247383)
chr3 (95-135)||(13867869-13867909)
chr3 (94-154)||(31293052-31293112)
chr3 (104-151)||(34666965-34667012)
chr3 (111-184)||(19578674-19578747)
[»] chr6 (3 HSPs)
chr6 (111-155)||(16260390-16260434)
chr6 (95-147)||(2536594-2536646)
chr6 (104-150)||(12185315-12185361)
[»] chr2 (8 HSPs)
chr2 (104-200)||(32630692-32630789)
chr2 (112-194)||(32908682-32908762)
chr2 (104-156)||(11259342-11259394)
chr2 (104-158)||(33133690-33133744)
chr2 (95-172)||(1743424-1743501)
chr2 (165-202)||(35656743-35656780)
chr2 (111-151)||(14690139-14690179)
chr2 (111-195)||(23914569-23914653)
[»] chr4 (7 HSPs)
chr4 (112-198)||(32639907-32639993)
chr4 (94-172)||(50376963-50377040)
chr4 (111-151)||(12294313-12294353)
chr4 (111-151)||(44277361-44277401)
chr4 (105-150)||(26492355-26492400)
chr4 (111-155)||(16529748-16529792)
chr4 (102-182)||(27746684-27746764)
[»] scaffold0013 (1 HSPs)
scaffold0013 (111-151)||(97007-97047)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 392
Target Start/End: Complemental strand, 38629333 - 38629036
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgt 193  Q
    ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38629333 attatttcagttatattcttaaacaaattttcctataataatgttatattgttggtgttattgaatgtgataagagtttatcttatatttgcaatattgt 38629234  T
Q  194 tgtgtaattagagaaaggcatggcttgctacaatcagtc----acatctatacatataaattttatgtcaaaaatctatacatataatataattttaggt 289  Q
    |||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  38629233 tgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaattttatgtcaaaaatctatac-----atataattttaggt 38629139  T
Q  290 tacctctaatatgatcccnnnnnnncaaggttcatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctct 389  Q
    || |||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629138 tatctctaatatgatccctttttttcaaggtccatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctct 38629039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 92 - 307
Target Start/End: Complemental strand, 38600711 - 38600496
Alignment:
Q  92 taattatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatatt 191  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38600711 taattatttcagttatattcttaaacaaattttcctataacaatgttatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatatt 38600612  T
Q  192 gttgtgtaattagagaaaggcatggcttgctacaatcagtc----acatctatacatat-aaattttatgtcaaaaatctatacatataatataatttta 286  Q
    |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||     |||||||||||    
T  38600611 gttgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaaattttatgtcaaaaatctatac-----atataatttta 38600517  T
Q  287 ggttacctctaatatgatccc 307  Q
    |||||||||||||||||||||    
T  38600516 ggttacctctaatatgatccc 38600496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 3955920 - 3955830
Alignment:
Q  112 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 202  Q
    ||||||||||||| || |||||||   ||||||||| |||| |||||    |||||||||||| |||||||||||||||||||||||||||    
T  3955920 ttaaacaaatttttctttaataatgatatattgttgatgtcgttgaaaactataagagtttatattatatttgcaatattgttgtgtaatt 3955830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38629428 - 38629386
Alignment:
Q  15 cttttatgttatgagtgattcatttgtaatactatgaatgaac 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38629428 cttttatgttatgagtgattcatttgtaatactatgaatgaac 38629386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 6228396 - 6228459
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatata--atattgttggtgtcatt 155  Q
    ||||||| | |||||| || ||||||||||| |||||||||||||  |||||||||||||||||    
T  6228396 attatttcaattatatcctcaaacaaatttttctataataatatattatattgttggtgtcatt 6228459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 18282585 - 18282546
Alignment:
Q  163 ataagagtttatcttatatttgcaatattgttgtgtaatt 202  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  18282585 ataaaagtttatgttatatttgcaatattgttgtgtaatt 18282546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 9050999 - 9051091
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgt 196  Q
    ||||| ||||||||||| ||| |||||||||||| |||||| || ||| ||| ||   ||||||| ||| | |||||||||  ||||||||||    
T  9050999 ttatactcttaaacaaaattttctataataatattatattgctgatgttattaaaatagataagaatttttgttatatttgttatattgttgt 9051091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 26647214 - 26647278
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    ||||||| |||||||  |||||||||||| | |||||||||||  ||||| ||||||| ||||||    
T  26647214 attatttcagttatacccttaaacaaattattctataataataatatatttttggtgttattgaa 26647278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 26917757 - 26917821
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    ||||||| ||||||   |||||||||||||| |||||||||| | ||||||| ||||| ||||||    
T  26917757 attatttcagttatgcccttaaacaaattttactataataatgttatattgtaggtgttattgaa 26917821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 26918798 - 26918862
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    ||||||| |||||||  |||||||||||| | |||||||||||  ||||| ||||||| ||||||    
T  26918798 attatttcagttatacccttaaacaaattattctataataataatatatttttggtgttattgaa 26918862  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 42561032 - 42560943
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 200  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  42561032 cttaaacaaatttttctataataatgttatattgttggtgtcattgaaaatgacaagagtttatattatatttgcaatattgttgtgtaa 42560943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 25788699 - 25788783
Alignment:
Q  112 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgt 196  Q
    ||||||||||||| |||||||||||| ||||||||||||||| | ||  |||||||||||||| |||||||| ||||||| ||||    
T  25788699 ttaaacaaatttttctataataatattatattgttggtgtcaattaaaatgataagagtttatattatattttcaatattattgt 25788783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 42617345 - 42617418
Alignment:
Q  127 tataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 200  Q
    ||||||||| | ||||||||  |||| || ||  |||||| ||||||| |||||||||||||||||||||||||    
T  42617345 tataataatgttatattgtttatgtcgttaaaaatgataaaagtttatattatatttgcaatattgttgtgtaa 42617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 40368061 - 40368108
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||||||    
T  40368061 cttaaacaaatttttctatattaatgttatattgttggtgtcattgaa 40368108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 15883239 - 15883279
Alignment:
Q  115 aacaaattttcctataataatataatattgttggtgtcatt 155  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  15883239 aacaaattttcttataataatattatattgtttgtgtcatt 15883279  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 38746335 - 38746269
Alignment:
Q  326 tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctctctc 392  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  38746335 tgtggtcctcttaatatgaccgattatagcaggtagatgtagtattacaactttattcttctctctc 38746269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 29005516 - 29005622
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgt 193  Q
    |||||| || ||||| | ||||||||||||| |||||||| | | ||||||||||| ||||||||   ||||| ||||||| ||||||||||||||||||    
T  29005516 attattcaaattatactgttaaacaaatttttctataatattgttatattgttggtatcattgaaaaggataaaagtttatattatatttgcaatattgt 29005615  T
Q  194 tgtgtaa 200  Q
    |||||||    
T  29005616 tgtgtaa 29005622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 15920055 - 15920095
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  15920055 cttaaacaaattttcttataataatgttatattgttggtgt 15920095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 5357342 - 5357440
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 202  Q
    |||||| |||||| || |||| ||||||||| || |||| ||||| |||||||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  5357342 ttatatccttaaataattttttctataataagattatatagttggcgtcattgaaattgataagagtttatattatatttgcattattgttgtgtaatt 5357440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 24650270 - 24650361
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 202  Q
    |||||||||| |||||| |||||||  |||||||||| |||||||  | |||| |||||||||| |||||||||  ||||||||||||||||    
T  24650270 cttaaacaaactttcctgtaataatgcaatattgttgatgtcattttaagtgaaaagagtttatgttatatttgttatattgttgtgtaatt 24650361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 10040894 - 10040847
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  10040894 cttaaacaaattttcctataaaaatgttatattgttggtgttattgaa 10040847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 35791938 - 35791979
Alignment:
Q  112 ttaaacaaattttcctataataatataatattgttggtgtca 153  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  35791938 ttaaacaaattttcctataataatgttatattgttgatgtca 35791979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 3584134 - 3584174
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||| ||||||||| ||||||||||| |||||||||||||    
T  3584134 cttaagcaaattttcttataataatattatattgttggtgt 3584174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 14734490 - 14734553
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    ||||||| | ||||| | |||||||||||| ||||||||||| | |||||||| |||||||||||    
T  14734490 attatttcaattatactattaaacaaattt-cctataataattttatattgtttgtgtcattgaa 14734553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 1338122 - 1338208
Alignment:
Q  113 taaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgta 199  Q
    ||||||||||||  ||||| ||| | ||||||||||||||||||||  ||||||||||||||  |||||||||||||| ||||||||    
T  1338122 taaacaaatttttgtataaaaatgttatattgttggtgtcattgaaaatgataagagtttatactatatttgcaatatggttgtgta 1338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 54402295 - 54402229
Alignment:
Q  326 tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctctctc 392  Q
    ||||||||||||||||| |||  |||||||||||| |||||| |||| |||||||||||||||||||    
T  54402295 tgtggtcctcttaatataaccaattatagcaggtacatgtagtattacaactttattcttctctctc 54402229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 28247302 - 28247383
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattg 192  Q
    ||||||||||||||| |||||| || | |||| |||| ||||||||||  |||||| | ||||| |||||||||||||||||    
T  28247302 cttaaacaaattttcatataatgatgttatatagttgatgtcattgaaaatgataaaaatttatattatatttgcaatattg 28247383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 13867909 - 13867869
Alignment:
Q  95 ttatttaagttatattcttaaacaaattttcctataataat 135  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  13867909 ttatttcagttatattcttaaacaaattttcatataataat 13867869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 31293052 - 31293112
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcat 154  Q
    ||||||| | ||||| | |||| |||||||| |||||||||||| ||||||||||||||||    
T  31293052 attattttaattatacttttaagcaaatttttctataataatattatattgttggtgtcat 31293112  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 34666965 - 34667012
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||||| ||||||||||||| |||||||||||  |||||||||||||    
T  34666965 ttatatttttaaacaaatttttctataataatagtatattgttggtgt 34667012  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 19578674 - 19578747
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttg 184  Q
    |||||||||||||||| |||||||| | ||||||||||||| ||| ||    |||||||||| | |||||||||    
T  19578674 cttaaacaaattttccaataataatgttatattgttggtgttattaaaaaatataagagtttttattatatttg 19578747  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 16260434 - 16260390
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcatt 155  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  16260434 cttaaacaaattttcctataataatattatattgttggtgtcatt 16260390  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 2536646 - 2536594
Alignment:
Q  95 ttatttaagttatattcttaaacaaattttcctataataatataatattgttg 147  Q
    |||||| | ||||||| ||||||||||||| |||||||||||| |||||||||    
T  2536646 ttatttcaattatatttttaaacaaatttttctataataatattatattgttg 2536594  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 12185315 - 12185361
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtg 150  Q
    |||||||||||||||||||||| |||| |||| | ||||||||||||    
T  12185315 ttatattcttaaacaaattttcttatattaatgttatattgttggtg 12185361  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 32630789 - 32630692
Alignment:
Q  104 ttatattcttaaacaaatttt-cctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 200  Q
    ||||| ||| ||||||||||| ||||||||||| | ||||| ||||||||||||||     ||||||| ||| |||||||||||||||||| ||||||    
T  32630789 ttatactctaaaacaaatttttcctataataatgttatatttttggtgtcattgaaaagattaagagtatatattatatttgcaatattgtagtgtaa 32630692  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 32908682 - 32908762
Alignment:
Q  112 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgtt 194  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||||   | ||||||||||| |||||||| | ||||||||    
T  32908682 ttaaacaaattt-cctataataatgttatattgttggtgtcattgaa-aaggtaagagtttatattatattttctatattgtt 32908762  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 11259342 - 11259394
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattg 156  Q
    ||||| || |||||||||||| |||||||||| ||||||||||| ||||||||    
T  11259342 ttatactcataaacaaatttttctataataatgtaatattgttgatgtcattg 11259394  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 33133744 - 33133690
Alignment:
Q  104 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 158  Q
    |||||| |||||| ||||||| ||||||||||||  |||||||||||| ||||||    
T  33133744 ttatatccttaaataaatttttctataataatattttattgttggtgttattgaa 33133690  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 1743424 - 1743501
Alignment:
Q  95 ttatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagttt 172  Q
    |||||| | ||||| ||||||||||||||| |||||||||| | ||||||||| ||| ||| ||   |||||||||||    
T  1743424 ttatttcaattatagtcttaaacaaatttttctataataattttatattgttgttgtaattaaaaaagataagagttt 1743501  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 35656780 - 35656743
Alignment:
Q  165 aagagtttatcttatatttgcaatattgttgtgtaatt 202  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  35656780 aagagtttatattatatttgcactattgttgtgtaatt 35656743  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14690179 - 14690139
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  14690179 cttaaacatattttcctataataatgttatattgttggtgt 14690139  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 23914569 - 23914653
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttg 195  Q
    |||||||||||||  |||||| ||| | |||||||| |||| ||||||   ||||||| ||||| |||||||||  |||||||||    
T  23914569 cttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgttatattgttg 23914653  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 32639993 - 32639907
Alignment:
Q  112 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgt 198  Q
    ||||| ||||||| |||||||||| | ||||||||| | ||||||||   ||||  ||||||| ||||||||||||| |||||||||    
T  32639993 ttaaataaatttttctataataatgttatattgttgatttcattgaaaaggatacaagtttatattatatttgcaatgttgttgtgt 32639907  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 50376963 - 50377040
Alignment:
Q  94 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagttt 172  Q
    |||||| ||||||||| | ||||||| ||| | ||||||||| | ||||||||||||||||||||  ||||||||||||    
T  50376963 attattaaagttatatccctaaacaactttgc-tataataatgttatattgttggtgtcattgaaaatgataagagttt 50377040  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 12294313 - 12294353
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  12294313 cttaaacaaattttcatataataatattatattgttggtgt 12294353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44277401 - 44277361
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  44277401 cttaaacaaattttcatataataatattatattgttggtgt 44277361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 26492355 - 26492400
Alignment:
Q  105 tatattcttaaacaaattttcctataataatataatattgttggtg 150  Q
    |||| ||||||||||||||||||||| |||| | ||||||||||||    
T  26492355 tatactcttaaacaaattttcctatattaatgttatattgttggtg 26492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 16529792 - 16529748
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgtcatt 155  Q
    |||||||||||||||||||||| |||| ||||| |||||| ||||    
T  16529792 cttaaacaaattttcctataatgatattatattattggtggcatt 16529748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 27746764 - 27746684
Alignment:
Q  102 agttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatt 182  Q
    |||||||  ||||||||||||  |||| |||||| | ||||| ||||||||||||||   ||||||| ||||| |||||||    
T  27746764 agttatacccttaaacaaattcacctacaataatgttatattattggtgtcattgaaaaagataagaatttatattatatt 27746684  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 97007 - 97047
Alignment:
Q  111 cttaaacaaattttcctataataatataatattgttggtgt 151  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  97007 cttaaacaaatttttttataataatattatattgttggtgt 97047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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