View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18382_high_3 (Length: 369)
Name: NF18382_high_3
Description: NF18382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18382_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 51740378 - 51740010
Alignment:
| Q |
1 |
catgaattacctacctttgctgctgaaccaacaaccagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaa |
100 |
Q |
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| T |
51740378 |
catgaattacctacctttgctgctgaaccaacgactagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaa |
51740279 |
T |
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| Q |
101 |
tatgaaggtaatgacaaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaa |
200 |
Q |
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| T |
51740278 |
tatgaaggtaatgacaaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaa |
51740179 |
T |
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| Q |
201 |
agcatttataatgtcacattgtaaacccatgtatccaaaatataccggaagtataaagttataaattgaataaccaagtttatgtatcaacgttctagca |
300 |
Q |
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| T |
51740178 |
agcatttataatgtcacattgtaaacccatgtatccaaaatataccggaagtataaagttataaattgaataaccaagtttatgaatcaacgttctagca |
51740079 |
T |
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| Q |
301 |
gtcttgccttctttaggaaatagcaatccaatnnnnnnncaatgaataatactattgtaattccatatt |
369 |
Q |
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| T |
51740078 |
gttttgccttctttaggaaatagcaatccaataaaaaaacaatgaataatactattgtaattccatatt |
51740010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 46 - 320
Target Start/End: Complemental strand, 10201008 - 10200734
Alignment:
| Q |
46 |
gcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaatatgaaggtaatgacaaactaagagagttccaccaagcttgcttc |
145 |
Q |
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| T |
10201008 |
gcatatcctctagtgttcaacatgaagccaagaaaaatcccttcatttgtaggaatatgaaggtaacgacaaactataagagttccgccgagtttgctac |
10200909 |
T |
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| Q |
146 |
caatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaaagcatttataatgtcacattgtaaacccatgtatccaaaatatac |
245 |
Q |
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||||||||| ||| ||||||||| | ||||| | | | ||| | | |||| ||||||| | |||||||||||| |||| |||||||| ||||| |
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| T |
10200908 |
caatgctcaacaagatcaatatggctacattggctgttcgattcagtcttgtaaacacatttatgaggtcacattgtaatcccaaatatccaaagtatac |
10200809 |
T |
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| Q |
246 |
cggaagtataaagttataaattgaataaccaagtttatgtatcaacgttctagcagtcttgccttctttaggaaa |
320 |
Q |
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| T |
10200808 |
tggaaggacaaagttataaattgaataaccaagtttttgtagcaatgttctagctgttttaccttccttaggaaa |
10200734 |
T |
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