View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18382_high_4 (Length: 284)

Name: NF18382_high_4
Description: NF18382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18382_high_4
NF18382_high_4
[»] chr6 (6 HSPs)
chr6 (19-284)||(11132317-11132582)
chr6 (77-284)||(11155657-11155864)
chr6 (77-284)||(11196104-11196311)
chr6 (133-284)||(11199156-11199307)
chr6 (133-250)||(11160575-11160692)
chr6 (113-173)||(11169972-11170032)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 11132317 - 11132582
Alignment:
Q  19 cagagacatgcaagatgccgtcattatcaatttggaaactgaccaagatttgaggtatacctgccggagctgggggaatttccaaaacaaattttcctag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132317 cagagacatgcaagatgccgtcattatcaatttggaaactgaccatgatttgaggtatacctgccggagctgggggaatttccaaaacaaattttcctag 11132416  T
Q  119 caagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132417 caagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctg 11132516  T
Q  219 gtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctccaatccaagg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132517 gtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctccaatccaagg 11132582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 11155657 - 11155864
Alignment:
Q  77 acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg 176  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||||  || |||||||||| || ||||| || ||||||||||| | ||||||     
T  11155657 acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagttattttcctctcaccttcataaacatgaattagaatattc 11155756  T
Q  177 gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctcca 276  Q
     ||||||| || | |||||| |||||||| ||||||||  ||| |||||||  |||||||||||| || |||||   ||| || ||||||||  ||||||    
T  11155757 atttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcataatccccccatgagtctcca 11155856  T
Q  277 atccaagg 284  Q
    ||||||||    
T  11155857 atccaagg 11155864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 11196104 - 11196311
Alignment:
Q  77 acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg 176  Q
    |||||||| ||| || ||||||||||| |||||| ||||||||||||||||  || |||||||||| || ||||| || ||||||| ||| | ||||||     
T  11196104 acctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattc 11196203  T
Q  177 gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctcca 276  Q
     ||||||| || | |||||| |||||||| ||||||||  ||| |||||||  |||||||||||| || ||| ||  ||| || ||||||||||||||||    
T  11196204 atttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctcca 11196303  T
Q  277 atccaagg 284  Q
    ||||||||    
T  11196304 atccaagg 11196311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 284
Target Start/End: Original strand, 11199156 - 11199307
Alignment:
Q  133 tagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggt 232  Q
    |||||||||| || ||||| || ||||||||||| | ||||||  | ||||| || | |||||| |||||||| ||||||||  ||| |||||||  |||    
T  11199156 tagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggt 11199255  T
Q  233 attcctaggaatcattgttgacatgattcccccatgtttctccaatccaagg 284  Q
    ||||||||| || |||||   ||| || ||||||||  ||||||||||||||    
T  11199256 attcctagggattattgtgttcataatccccccatgagtctccaatccaagg 11199307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 11160575 - 11160692
Alignment:
Q  133 tagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggt 232  Q
    |||||||||| || ||||| || ||||||||||| | ||||||  ||||||| || | |||||| |||||||| ||||||||  ||| |||||||  |||    
T  11160575 tagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggt 11160674  T
Q  233 attcctaggaatcattgt 250  Q
    ||||||||| || |||||    
T  11160675 attcctagggattattgt 11160692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 11169972 - 11170032
Alignment:
Q  113 tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata 173  Q
    |||||||||||||||  || |||||||||  || |||||||| |||||||||||| |||||    
T  11169972 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata 11170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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