View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18382_low_1 (Length: 703)
Name: NF18382_low_1
Description: NF18382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18382_low_1 |
 | |
|
| [»] scaffold0665 (1 HSPs) |
| | |
|
| [»] scaffold0440 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Complemental strand, 26064328 - 26063678
Alignment:
| Q |
19 |
gtcgtatgctaatttaannnnnnnggtgttttatctcatcttcataaacacattgtgcaagcttatgtgcaatgttagggaattaggaactttgggtgaa |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26064328 |
gtcgtatgctaatttaatttttttggtgttttatctcatcttcataaacacattgtgcaagcttatgtgcaatgttagggaattaggaactttgggtgaa |
26064229 |
T |
|
| Q |
119 |
aggcattggaaaatacatgaaataagacacatttgtaaacaaagtatgaaacctggaataaaatttatacgaaactatagtggtcttgtactcagtactc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26064228 |
aggcattggaaaatacatgaaataagacacatttgtaaacaaagtatgaaacctggaataaagtttatacgaaactatagtggtcttgtactca------ |
26064135 |
T |
|
| Q |
219 |
atgtttatattttgttattatgttgggagctttatagcattgggtttgactttttggtatgaaggattttgtttcgaactgggcagaagcccacttcgcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26064134 |
-tgtttatattttgttattatgttgggagctttatagcattgggtttgacttttttgtatgaaggattttgtttcggactgggcagaagcccacttcgcc |
26064036 |
T |
|
| Q |
319 |
ggccaacactagtagacctattaaccctgaatccttgggtagcagagttccacagtggacctcctgtatatgttgccgcataggcgcgctctctcgtcac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
26064035 |
ggccaacactagtagacctattaaccctgaatccttgggtagcagagttccacagtggacctcctatatatgttgccgcataggcgcgctctc--gtcac |
26063938 |
T |
|
| Q |
419 |
atcatggtcatctaattgatctctaatggctttccgcacttaatttgtgttgtgtttctagcgaacggttactacgtctcatactataaaagcatgaatc |
518 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063937 |
atcatggtcatctaattgatctctaacggctttccgcacttaatttgtgttgtgtttctagcgaacggttactacgtctcatactataaaagcatgaatc |
26063838 |
T |
|
| Q |
519 |
cacgtcacgcctgatgacactctgacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaag |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063837 |
gacgtcacgcctgatgacactctgacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaag |
26063738 |
T |
|
| Q |
619 |
tttgaagaagtcaaaattcggccaccgattttacaaatcggccaccgaatttgctgctga |
678 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26063737 |
tttgaagaagtcagaattcggcaaccgaatttacaaatcggccaccaaatttgctgctga |
26063678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 542 - 678
Target Start/End: Complemental strand, 648326 - 648188
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
648326 |
gacatttttcatgtaattttaggggttatttattgtcattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
648228 |
T |
|
| Q |
641 |
caccga-ttttacaaatcggccaccga-atttgctgctga |
678 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
648227 |
caccgatttttacaaatcggccaccgatttttgctgctga |
648188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 542 - 678
Target Start/End: Complemental strand, 651600 - 651462
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
651600 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
651502 |
T |
|
| Q |
641 |
caccga-ttttacaaatcggccaccga-atttgctgctga |
678 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
651501 |
caccgatttttacaaatcggccaccgatttttgctgctga |
651462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 542 - 622
Target Start/End: Original strand, 12171145 - 12171226
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttg |
622 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
12171145 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagtttg |
12171226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 26035450 - 26035362
Alignment:
| Q |
75 |
gcaagcttatgtgcaatgttagggaattaggaactttgggtgaaaggcattggaaaatacatgaaataagacacatttgtaaacaaagtat |
165 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
26035450 |
gcaagcttatgtgcaatgttaggggtat-ggaactttgggc-aaagccattggaaaatacataaaatcagacacatttgtaaacaaagtat |
26035362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 542 - 678
Target Start/End: Original strand, 1837577 - 1837713
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1837577 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaaaaacaagaaattgaagtttgaagaagtcagaattcggcc |
1837676 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgctga |
678 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1837677 |
accgattttacaaatcggccaacgaatttgctgctga |
1837713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 542 - 666
Target Start/End: Complemental strand, 32705416 - 32705292
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32705416 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
32705318 |
T |
|
| Q |
641 |
caccgattttacaaatcggccaccga |
666 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
32705317 |
caccgattttacaaatcggcccccga |
32705292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 542 - 666
Target Start/End: Original strand, 14794750 - 14794874
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||| ||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14794750 |
gacatttctcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
14794848 |
T |
|
| Q |
641 |
caccgattttacaaatcggccaccga |
666 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
14794849 |
caccgattttacaaatcggcccccga |
14794874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 542 - 678
Target Start/End: Original strand, 14789724 - 14789859
Alignment:
| Q |
542 |
gacatttttcatgtaatttta-aggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14789724 |
gacatttttcatgtaattttaggggttatttat--tgattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
14789820 |
T |
|
| Q |
641 |
caccgattttacaaatcggccaccga-atttgctgctga |
678 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
14789821 |
caccgattttacaaatcggcccccgatttttgctgctga |
14789859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 15537424 - 15537504
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15537424 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
15537504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 15534212 - 15534292
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
15534212 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaacaaattgaagttt |
15534292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 19665807 - 19665727
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
19665807 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttccaagctacaaaagaagaagaaattgaagttt |
19665727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 542 - 678
Target Start/End: Original strand, 36326023 - 36326159
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36326023 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaattcggcc |
36326122 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgctga |
678 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |
|
|
| T |
36326123 |
acacattttacaaaccggccaccgaatttgctgctga |
36326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 542 - 655
Target Start/End: Complemental strand, 4843146 - 4843033
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
4843146 |
gacatttttcatgtaattttaggggttatttattgtaattaatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
4843048 |
T |
|
| Q |
641 |
caccgattttacaaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4843047 |
caccgattttacaaa |
4843033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 31527528 - 31527624
Alignment:
| Q |
578 |
attcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggccaccgattttacaaatcggccaccgaatttgctgc |
675 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||| |||||||||||| | | ||| ||||||||||||| || | |||||||||||| |||||||| |
|
|
| T |
31527528 |
attcatgaagctgcaagctgcaaaagacaaagaaaatgaagtttgaagtattggaaa-tcggccaccgattatatagatcggccaccgattttgctgc |
31527624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 31625648 - 31625728
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||| ||||||||||| || | ||||||| |||||||||||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
31625648 |
gacatttttgatgtaattttaggggttattcattttgattcatggagttgcaagccacaaaagacaaagaaaatgaagttt |
31625728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 542 - 678
Target Start/End: Complemental strand, 32506997 - 32506861
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32506997 |
gacattttttatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaattcggcc |
32506898 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgctga |
678 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |
|
|
| T |
32506897 |
accgattttacaaacaggcctccgaatttgctgctga |
32506861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 542 - 666
Target Start/End: Original strand, 13495181 - 13495306
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13495181 |
gacatttttcatgtaattttaggggttatttattgttattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaattcggc |
13495280 |
T |
|
| Q |
641 |
caccgattttacaaatcggccaccga |
666 |
Q |
| |
|
| ||||||||||||||||||| |||| |
|
|
| T |
13495281 |
ccccgattttacaaatcggcccccga |
13495306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 545 - 676
Target Start/End: Original strand, 13492390 - 13492521
Alignment:
| Q |
545 |
atttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggccac |
643 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
13492390 |
atttttcatgtaattttagggattatttattgtaatttatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagagttcggcccc |
13492489 |
T |
|
| Q |
644 |
cgattttacaaatcggccaccgaatttgctgct |
676 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |
|
|
| T |
13492490 |
cgattttacaaatcagcc-ccgaatttgctgct |
13492521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 542 - 650
Target Start/End: Original strand, 10759265 - 10759373
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10759265 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
10759363 |
T |
|
| Q |
641 |
caccgatttt |
650 |
Q |
| |
|
|||||||||| |
|
|
| T |
10759364 |
caccgatttt |
10759373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 678
Target Start/End: Original strand, 1935732 - 1935866
Alignment:
| Q |
546 |
tttttcatgtaatttt-aag-gatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaag-tttgaagaagtcaaaattcggcca |
642 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||| |||||||||||||||||| |||||| | ||| |||||| || ||||||| | |||||||| |||| |
|
|
| T |
1935732 |
ttttccatgtaatttttaagtgatattcattgtaattcatggagctgcaagccacaaaatagcaa-aaattggagttttgaag-attcaaaattaagcca |
1935829 |
T |
|
| Q |
643 |
ccg-attttacaaatcggccaccgaatttgctgctga |
678 |
Q |
| |
|
||| || ||| | ||||||| ||||||||||||||| |
|
|
| T |
1935830 |
ccgaatcataccattcggccatcgaatttgctgctga |
1935866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 7e-57; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 542 - 674
Target Start/End: Complemental strand, 14617569 - 14617437
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
14617569 |
gacatttttcatataattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgatgaagtcagaattcggcc |
14617470 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctg |
674 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
14617469 |
gccgattttacaaatcggcccccgaatttgctg |
14617437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 542 - 650
Target Start/End: Original strand, 34404992 - 34405100
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
|||||||||||||||||||| || | ||| ||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
34404992 |
gacatttttcatgtaatttttggggttatttattgtaattcattgagttgcaagctacagaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
34405090 |
T |
|
| Q |
641 |
caccgatttt |
650 |
Q |
| |
|
|||||||||| |
|
|
| T |
34405091 |
caccgatttt |
34405100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 26713465 - 26713385
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26713465 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
26713385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 26983203 - 26983123
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
26983203 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
26983123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 545 - 621
Target Start/End: Original strand, 33574254 - 33574331
Alignment:
| Q |
545 |
atttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| |||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
33574254 |
atttttcatgtaattttaagggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattaaagttt |
33574331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 675
Target Start/End: Complemental strand, 15533343 - 15533211
Alignment:
| Q |
544 |
catttttcatgtaattttaagga--tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
||||||||||||||||||| || | || |||| ||||||| |||||||||| |||||||| |||||| |||||||||||| | | ||| |||||| |
|
|
| T |
15533343 |
catttttcatgtaattttagggggttttttattggaattcatgaagctgcaagccgcaaaagaaaaagaaaatgaagtttgaagtattggaaa-tcggcc |
15533245 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgc |
675 |
Q |
| |
|
||||||| || | |||||||||||| |||||||| |
|
|
| T |
15533244 |
accgattatatagatcggccaccgattttgctgc |
15533211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 675
Target Start/End: Complemental strand, 15543525 - 15543393
Alignment:
| Q |
544 |
catttttcatgtaattttaagga--tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
||||||||||||||||||| || | || |||| ||||||| |||||||||| ||||||| |||||| |||||||||||| | | |||| ||||| |
|
|
| T |
15543525 |
catttttcatgtaattttagggggttttttattggaattcatgaagctgcaagccgcaaaagacaaagaaaatgaagtttgaagtattggaaat-cggcc |
15543427 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgc |
675 |
Q |
| |
|
||||||| || | |||||||||||| |||||||| |
|
|
| T |
15543426 |
accgattatatagatcggccaccgattttgctgc |
15543393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 542 - 678
Target Start/End: Complemental strand, 17867495 - 17867358
Alignment:
| Q |
542 |
gacatttttcatgtaattttaag-gatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17867495 |
gacatttttcatgtaattttaggagttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
17867397 |
T |
|
| Q |
641 |
caccgattttacaaatcggccaccga-atttgctgctga |
678 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17867396 |
caccgattttacaaatcggccaccgatttttgctgctga |
17867358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 542 - 650
Target Start/End: Complemental strand, 17864216 - 17864108
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggc |
640 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17864216 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggc |
17864118 |
T |
|
| Q |
641 |
caccgatttt |
650 |
Q |
| |
|
|||||||||| |
|
|
| T |
17864117 |
caccgatttt |
17864108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 294057 - 294136
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
294057 |
gacatttttcatgtaattttgaggatattcattgtgattcatggagctcccagctacaaaagaacaagaaattgaagttt |
294136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 35773674 - 35773594
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
35773674 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
35773594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 6966271 - 6966351
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
|||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
6966271 |
gacatttttcatgtaatttttggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
6966351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 621
Target Start/End: Original strand, 24782567 - 24782646
Alignment:
| Q |
543 |
acatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||| |||| | || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
24782567 |
acatttttcatgttatttgaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
24782646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 629
Target Start/End: Complemental strand, 1309981 - 1309896
Alignment:
| Q |
544 |
catttttcatgtaattttaag-gatattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagt |
629 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| ||| |||||| ||||||| ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
1309981 |
catttttcatataattttaggtgatattcattgtaatttatggagttgcaagccacaaaag-acaagaatctgaagtttcaagaagt |
1309896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 650
Target Start/End: Original strand, 33312163 - 33312234
Alignment:
| Q |
578 |
attcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggccaccgatttt |
650 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||| | | ||| ||||||||||||||| |
|
|
| T |
33312163 |
attcatggagctgcaagccacaaaagacaaagaaaatgaagtttgaagtattggaaa-tcggccaccgatttt |
33312234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 675
Target Start/End: Complemental strand, 23760751 - 23760619
Alignment:
| Q |
544 |
catttttcatgtaattttaagga--tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggcc |
641 |
Q |
| |
|
||||||||||||||||||| || | || |||| ||||||| |||||||||| ||||||| |||||| |||||||||||| | | ||| |||||| |
|
|
| T |
23760751 |
catttttcatgtaattttagggggttttttattggaattcatgaagctgcaagccgcaaaagacaaagaaaatgaagtttgaagtattggaaa-tcggcc |
23760653 |
T |
|
| Q |
642 |
accgattttacaaatcggccaccgaatttgctgc |
675 |
Q |
| |
|
||||||| | | |||||||||||| |||||||| |
|
|
| T |
23760652 |
accgattagatagatcggccaccgattttgctgc |
23760619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 576 - 666
Target Start/End: Complemental strand, 752 - 663
Alignment:
| Q |
576 |
tgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcggccaccgattttacaaatcggccaccga |
666 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
752 |
tgattcatggagttgcaagctacaaaagaacaagaaattgaagtttgaagaagtcagaa-tcggccaccgattttacaaatcggcccccga |
663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 9110 - 9190
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9110 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
9190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 11139693 - 11139613
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
11139693 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
11139613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 22627457 - 22627377
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
22627457 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
22627377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 39564608 - 39564528
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggat-attcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt |
621 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39564608 |
gacatttttcatgtaattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt |
39564528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 1097355 - 1097294
Alignment:
| Q |
542 |
gacatttttcatgtaattttaa-ggatattcattgtgattcatggagctgcaagctacaaaa |
602 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||||||| |||||||| || |||||| |
|
|
| T |
1097355 |
gacattttttatgtaattttaagggatatttattatgattcatagagctgcaggccacaaaa |
1097294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 675
Target Start/End: Complemental strand, 13239 - 13105
Alignment:
| Q |
542 |
gacatttttcatgtaattttaaggatattc--attgtgattcatggagctgcaagctacaaaagaacaagaaattgaagtttgaagaagtcaaaattcgg |
639 |
Q |
| |
|
||||||||||||||||||||| || ||| |||| ||||||| |||||||||| |||||||| |||||| |||||||||||| | | ||| |||| |
|
|
| T |
13239 |
gacatttttcatgtaattttagggggtttcttattggaattcatgaagctgcaagccacaaaagacaaagaaaatgaagtttgaagtattggaaa-tcgg |
13141 |
T |
|
| Q |
640 |
ccaccgattttacaaatcggccaccgaatttgctgc |
675 |
Q |
| |
|
|||| |||| | ||||||||| |||| |||||||| |
|
|
| T |
13140 |
ccactgattggataaatcggcccccgattttgctgc |
13105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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