View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_high_1 (Length: 634)
Name: NF18384_high_1
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 70 - 618
Target Start/End: Original strand, 37834516 - 37835064
Alignment:
| Q |
70 |
caacagataaaattggacaaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc |
169 |
Q |
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| T |
37834516 |
caacagataaaattggacgaccaaaaaatatatgattttttgtttcaactctgccacaatccaccaacacatagagaagaagagttcaggttcacccctc |
37834615 |
T |
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| Q |
170 |
ttttactaagattttcctgagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct |
269 |
Q |
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| T |
37834616 |
ttttactaagattttcctcagtaggaaactaggaatcctaacaaatggtaagctaccttaactgagaaactcgactctcctcacttccaaacatcttcct |
37834715 |
T |
|
| Q |
270 |
gtcccaccctccaacttctcaactccaagaaccaaaccatttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg |
369 |
Q |
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| T |
37834716 |
gtcccaccctccaacttctcaactccaagaaccaaaccgtttcctcctcccgttgaaacaaccttcttctccaactccttcaacaatcatatctgctagg |
37834815 |
T |
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| Q |
370 |
catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca |
469 |
Q |
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| T |
37834816 |
catttatctttatcaagcgatatatcataaactctactaaagagatgacgcaagttgtctccatcgctccatccaaaaattcgtgcctttcccatctcca |
37834915 |
T |
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| Q |
470 |
atcaccttccttaagttttcatcaaaccaactcacccctacacgcttcggatacgctgctcatataaatatattcatacagaaattcaatttggattgca |
569 |
Q |
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| T |
37834916 |
atcaccttccttaagttttcatcaaaccaactcacccctccacgcttcggatacgctactcatataaatatattcatacagaaattcaatttggattgga |
37835015 |
T |
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| Q |
570 |
tcatgctcacccatagtagttagttatattttcaattgaacaacaatat |
618 |
Q |
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| T |
37835016 |
tcatgctcacccatagtagttagttatattttcaattgaacaacaatat |
37835064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 37834427 - 37834478
Alignment:
| Q |
23 |
cagaaccagaaccagacccctgtgcacaatcagacgggactagactccaaca |
74 |
Q |
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| T |
37834427 |
cagagccagaaccagacccctgtgcacaatcagacaggactagactccaaca |
37834478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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