View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18384_high_14 (Length: 376)
Name: NF18384_high_14
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 45467869 - 45467523
Alignment:
| Q |
19 |
gacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggcaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45467869 |
gacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggcaca |
45467770 |
T |
|
| Q |
119 |
acaacaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtcagtggtatcagtgtcatgtgacatcagtgtcatttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45467769 |
acaacaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtcagtggtatcagtgtcatgtgacatcaatgtcatttc |
45467670 |
T |
|
| Q |
219 |
taatgtctgtgtctatatcagcgttttatagcaccaacacttcagattgaaggcgtacatctaacacgtgttggtatccaactaacacaaacactggtaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
45467669 |
taatgtctgtgtctatatcagcgttttatagcaccaacacttcagattgaaggcgtacatctaacatgtgttggtatccaactgacacaaacactggtaa |
45467570 |
T |
|
| Q |
319 |
ctacatacnnnnnnnnttctattttctaaaattattatcgagcctatg |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
45467569 |
ctacatac-aaaaaatttctattttctaaaattattatcgtgcctatg |
45467523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 25734519 - 25734829
Alignment:
| Q |
19 |
gacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggcaca |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25734519 |
gacactccccaagccccaccaacacaaaatagaccccctaaatacctatgcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggcaca |
25734618 |
T |
|
| Q |
119 |
aca---acaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtcagtggtatcagtgtcatgtgacatcagtgtcat |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||| |
|
|
| T |
25734619 |
acaccaacaaatgtagttatatttaatcactttcattttctcatattattgccggtgccaacatgtcagtggtatcagtgtcatgtggcgtaagtgtcat |
25734718 |
T |
|
| Q |
216 |
ttctaatgtctgtgtctatatcagcgttttatagcaccaacacttcagattgaaggcgtacatctaacacgtgttggtatccaactaacacaaacactgg |
315 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
25734719 |
ttctaatgtttgtgtcaatatcagcgttttatagcaccgacacttcaaattgaaggcgtgcaactaacacgtgtaggtacccaactaacacaaacacttt |
25734818 |
T |
|
| Q |
316 |
taactacatac |
326 |
Q |
| |
|
||| ||||||| |
|
|
| T |
25734819 |
taattacatac |
25734829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University