View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_high_19 (Length: 326)
Name: NF18384_high_19
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_19 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 43619866 - 43619551
Alignment:
| Q |
13 |
gagatgaaaagtatgaacacagaacagaacgagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcg |
112 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43619866 |
gagatgaaaaatatgaacacagaacagaacgagatcacgaaaatccaaatccaattcgtgtcagatttccgatcttagcaataaacggaccttcgattcg |
43619767 |
T |
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| Q |
113 |
acgatttcacaaaggnnnnnnnn---gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccat |
209 |
Q |
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| T |
43619766 |
acgatttcacaaaggaaaaaaaaaacgctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccat |
43619667 |
T |
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| Q |
210 |
ggaaatcggaaaagaaaattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagaga |
309 |
Q |
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| T |
43619666 |
ggaaatcgggaaagaaaattggcaattgatgaaaaatagaggagaagaatgaatgaaaagaaattaca-aagagggaaaggaattttctgagaagagaga |
43619568 |
T |
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| Q |
310 |
tgaaaagtatgggttca |
326 |
Q |
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|||||||||||| |||| |
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| T |
43619567 |
tgaaaagtatggattca |
43619551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 43619960 - 43619904
Alignment:
| Q |
226 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaaga |
282 |
Q |
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| T |
43619960 |
aattgacaattgatgaaaaatagaggagaaaaatggaggaaaagaaattacagaaga |
43619904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 34080520 - 34080205
Alignment:
| Q |
13 |
gagatgaaaagtatgaacacagaacagaacgagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcg |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34080520 |
gagatgaaaagtatgaacacagaactgaacgagatcacgaaaattcaaatccaaatcgtgtcagatttccgatctcagcaataaacagaccttcgattcg |
34080421 |
T |
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| Q |
113 |
acgatttcac-aaaggnnnnnnnn---gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgcca |
208 |
Q |
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| T |
34080420 |
acgatttcaccaaaggaaaaaaaaaacggtttctcaagagcttcgttgt--gtggaccaggcaagtccaccaacaaagcattggtattcaacttccgcca |
34080323 |
T |
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| Q |
209 |
tggaaatcggaaaagaaaattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagag |
308 |
Q |
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| T |
34080322 |
tggaaatcgggaaagaaaattggcaattgatgaaaaatagatgagaagaatggatgaaaagaaattacagaagagggaaaggaattttctgagaagagag |
34080223 |
T |
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| Q |
309 |
atgaaaagtatgggttca |
326 |
Q |
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| T |
34080222 |
atgaaaagtatgggttca |
34080205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 34080600 - 34080506
Alignment:
| Q |
226 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatg |
320 |
Q |
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||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||| |
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| T |
34080600 |
aattgacaattgatgaaaaatagaggagaagaatggaggaaaagaaattacagaagaagaaaatgaactttctgagaagagagatgaaaagtatg |
34080506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 16362384 - 16362484
Alignment:
| Q |
226 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
325 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
16362384 |
aattgacaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagagagatgaaaagtatgggttc |
16362483 |
T |
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| Q |
326 |
a |
326 |
Q |
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| T |
16362484 |
a |
16362484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 16359927 - 16359827
Alignment:
| Q |
226 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |
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| T |
16359927 |
aattggcaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagaaagatgaaaagtgtgggttc |
16359828 |
T |
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| Q |
326 |
a |
326 |
Q |
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| T |
16359827 |
a |
16359827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 26374683 - 26374605
Alignment:
| Q |
136 |
gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaa |
214 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| || || || ||||| |||||||||| || ||||| |||| |
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| T |
26374683 |
gctttctcgagagcttcgttgtcggtggcccatgcaagacctccgacgaagcaccggtattcaacatcagccattgaaa |
26374605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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