View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_high_21 (Length: 305)

Name: NF18384_high_21
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_high_21
NF18384_high_21
[»] chr8 (5 HSPs)
chr8 (14-259)||(38335998-38336243)
chr8 (131-197)||(30277254-30277317)
chr8 (171-222)||(11185256-11185304)
chr8 (164-197)||(25869275-25869308)
chr8 (164-197)||(28769348-28769381)
[»] chr6 (5 HSPs)
chr6 (164-197)||(17241261-17241294)
chr6 (170-228)||(5566158-5566213)
chr6 (154-195)||(7931800-7931841)
chr6 (169-197)||(2160946-2160974)
chr6 (169-197)||(31583712-31583740)
[»] chr5 (2 HSPs)
chr5 (164-197)||(29590638-29590671)
chr5 (164-197)||(33533548-33533581)
[»] chr2 (5 HSPs)
chr2 (166-197)||(32615951-32615982)
chr2 (146-188)||(29419871-29419913)
chr2 (162-196)||(41032965-41032999)
chr2 (164-197)||(3611365-3611398)
chr2 (164-197)||(16867767-16867800)
[»] chr1 (4 HSPs)
chr1 (164-198)||(11893601-11893635)
chr1 (164-197)||(11211146-11211179)
chr1 (164-197)||(33108631-33108664)
chr1 (164-197)||(35925718-35925751)
[»] chr4 (2 HSPs)
chr4 (164-197)||(7694019-7694052)
chr4 (164-196)||(35743310-35743342)
[»] chr3 (4 HSPs)
chr3 (164-223)||(9279312-9279368)
chr3 (169-228)||(37273167-37273223)
chr3 (164-196)||(26542565-26542597)
chr3 (169-197)||(29771871-29771899)
[»] scaffold0286 (1 HSPs)
scaffold0286 (169-197)||(16143-16171)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 38336243 - 38335998
Alignment:
Q  14 catcaaccactcacaaagaatctcaactaatttctcccaaaaatgattctcataatgctgacatcaatgtcaataacggtgagttatgttgttattcgca 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38336243 catcaaccactcacgaagaatctcaactaatttctcccaaaaatgattctcataatgctgacatcaatgtcaataacggtgagttatgttgttattcgca 38336144  T
Q  114 ttgtatttatcataagctatataagctgttggtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatgtactacatgttataag 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38336143 ttgtatttatcataagctatataagctgttagtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatgtactacatgttataag 38336044  T
Q  214 ctgtttccattagctattctgaaaattgattatatcaatgtatttg 259  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  38336043 ctgtttccatcagctattctgaaaagtgattatatcaatgtatttg 38335998  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 30277317 - 30277254
Alignment:
Q  131 tatataagctgttggtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||   |||||  ||||||| | |||||||||||||||||| |||||||||||||||    
T  30277317 tatataagctgtt---ttcataagctatcctagagagtttatggaaataagctgaaaacaacttatg 30277254  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 11185256 - 11185304
Alignment:
Q  171 atggaaataagttgaaaacaacttatgtactacatgttataagctgtttcca 222  Q
    |||||||||||||||||||||||||||    |||||||||||| ||||||||    
T  11185256 atggaaataagttgaaaacaacttatg---aacatgttataagatgtttcca 11185304  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 25869308 - 25869275
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||| |||||||||||||||    
T  25869308 agagtttatggaaataagctgaaaacaacttatg 25869275  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 28769381 - 28769348
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||| |||||||||||||||    
T  28769381 agagtttatggaaataagctgaaaacaacttatg 28769348  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 17241294 - 17241261
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    ||||||||||||||||||||||||||||||||||    
T  17241294 agagtttatggaaataagttgaaaacaacttatg 17241261  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 5566213 - 5566158
Alignment:
Q  170 tatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccattagct 228  Q
    ||||||||||||||||||||||||||||    |||||| ||||||||||| ||||||||    
T  5566213 tatggaaataagttgaaaacaacttatg---gacatgtaataagctgttttcattagct 5566158  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 7931841 - 7931800
Alignment:
Q  154 gctatcccatagagtttatggaaataagttgaaaacaactta 195  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    
T  7931841 gctatcctatagagcttatggaaataagctgaaaacaactta 7931800  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 2160974 - 2160946
Alignment:
Q  169 ttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||||||||||||||    
T  2160974 ttatggaaataagttgaaaacaacttatg 2160946  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 31583712 - 31583740
Alignment:
Q  169 ttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||||||||||||||    
T  31583712 ttatggaaataagttgaaaacaacttatg 31583740  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 29590671 - 29590638
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    ||||||||||||||||||||||||||||||||||    
T  29590671 agagtttatggaaataagttgaaaacaacttatg 29590638  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 33533581 - 33533548
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||| |||||||||||||||||||||||||||||    
T  33533581 agagcttatggaaataagttgaaaacaacttatg 33533548  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 32615951 - 32615982
Alignment:
Q  166 agtttatggaaataagttgaaaacaacttatg 197  Q
    ||||||||||||||||||||||||||||||||    
T  32615951 agtttatggaaataagttgaaaacaacttatg 32615982  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 29419871 - 29419913
Alignment:
Q  146 tttcatttgctatcccatagagtttatggaaataagttgaaaa 188  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  29419871 tttcatatgctatcctagagagtttatggaaataagttgaaaa 29419913  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 41032999 - 41032965
Alignment:
Q  162 atagagtttatggaaataagttgaaaacaacttat 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  41032999 atagagtttatggaaataagctgaaaacaacttat 41032965  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 3611365 - 3611398
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    ||||||| ||||||||||||||||||||||||||    
T  3611365 agagtttgtggaaataagttgaaaacaacttatg 3611398  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 16867767 - 16867800
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||| |||||||||||||||||||||||||||||    
T  16867767 agagcttatggaaataagttgaaaacaacttatg 16867800  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 11893635 - 11893601
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatgt 198  Q
    |||||||||||||||||| ||||||||||||||||    
T  11893635 agagtttatggaaataagctgaaaacaacttatgt 11893601  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 11211146 - 11211179
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||||| |||||||||||||    
T  11211146 agagtttatggaaataagttaaaaacaacttatg 11211179  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 33108664 - 33108631
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||| |||||||||||||||||||||||||||||    
T  33108664 agagcttatggaaataagttgaaaacaacttatg 33108631  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 35925718 - 35925751
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    ||||||||||||||||||||||||||| ||||||    
T  35925718 agagtttatggaaataagttgaaaacagcttatg 35925751  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 7694052 - 7694019
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||| |||||||||||||||    
T  7694052 agagtttatggaaataagctgaaaacaacttatg 7694019  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 35743310 - 35743342
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttat 196  Q
    ||||||||||||||||||||| |||||||||||    
T  35743310 agagtttatggaaataagttggaaacaacttat 35743342  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 9279368 - 9279312
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccat 223  Q
    |||||||| ||||||||| |||||||| ||||| |||   ||||||||||||||||||||    
T  9279368 agagtttaaggaaataagctgaaaacagcttatatac---atgttataagctgtttccat 9279312  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 37273167 - 37273223
Alignment:
Q  169 ttatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccattagct 228  Q
    |||||||||||||||||||||||||||||    |||||| ||||| ||||||||| ||||    
T  37273167 ttatggaaataagttgaaaacaacttatg---gacatgtcataagttgtttccataagct 37273223  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 26542565 - 26542597
Alignment:
Q  164 agagtttatggaaataagttgaaaacaacttat 196  Q
    |||||||||||||||||||||||||||| ||||    
T  26542565 agagtttatggaaataagttgaaaacaagttat 26542597  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 29771871 - 29771899
Alignment:
Q  169 ttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||||||||||||||    
T  29771871 ttatggaaataagttgaaaacaacttatg 29771899  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 16143 - 16171
Alignment:
Q  169 ttatggaaataagttgaaaacaacttatg 197  Q
    |||||||||||||||||||||||||||||    
T  16143 ttatggaaataagttgaaaacaacttatg 16171  T

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