View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_high_22 (Length: 298)
Name: NF18384_high_22
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 5352508 - 5352778
Alignment:
| Q |
13 |
aatatacttggttcgaacataaagcattgagcaatgtgctataatctactcgacaacaaccatttatcaatctctttgaagattataaatctctctcaac |
112 |
Q |
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| T |
5352508 |
aatatacttggttcgaacataaagcattgagcaatgtgctataatctactcgacaacaaccatttatcaatctctttgaagattataaatctctctcaac |
5352607 |
T |
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| Q |
113 |
tcagttacatagttttttctctctcaaaggattagaaatggaatatggaannnnnnnctcacaatggtcaaggttgt--acaaattgatgtaggtatcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |
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| T |
5352608 |
tcagttacatagttttttctctctcaaaggattagaaatggaatatggaatttttttctcacaatggtcaaggttgtacacaaattgatgtaggtattaa |
5352707 |
T |
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| Q |
211 |
agtaaattttgaacttcacataccaaacttgtcaagttatgttaaaatatacttgagacaaattcgttagt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352708 |
agtaaattttgaacttcacataccaaacttgtcaagttatgttaaaatatacttgagacaaattcgttagt |
5352778 |
T |
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