View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_high_23 (Length: 297)

Name: NF18384_high_23
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_high_23
NF18384_high_23
[»] chr8 (7 HSPs)
chr8 (1-252)||(21237580-21237827)
chr8 (68-126)||(3240283-3240341)
chr8 (1-44)||(8443563-8443606)
chr8 (77-127)||(19876148-19876198)
chr8 (85-126)||(26469338-26469379)
chr8 (3-44)||(29617328-29617369)
chr8 (75-124)||(40619204-40619253)
[»] chr2 (6 HSPs)
chr2 (75-126)||(24461351-24461402)
chr2 (75-126)||(29574768-29574818)
chr2 (76-126)||(12648059-12648109)
chr2 (68-126)||(43397247-43397305)
chr2 (3-44)||(12647977-12648018)
chr2 (85-126)||(19596020-19596061)
[»] chr5 (5 HSPs)
chr5 (68-126)||(10332678-10332736)
chr5 (1-44)||(26510697-26510740)
chr5 (77-127)||(781321-781371)
chr5 (61-126)||(7036132-7036195)
chr5 (1-38)||(10332602-10332639)
[»] chr3 (5 HSPs)
chr3 (68-126)||(29921957-29922015)
chr3 (68-126)||(29971110-29971168)
chr3 (68-126)||(50194410-50194468)
chr3 (75-125)||(12947414-12947464)
chr3 (4-44)||(12947331-12947371)
[»] scaffold0347 (1 HSPs)
scaffold0347 (3-100)||(5965-6063)
[»] chr1 (4 HSPs)
chr1 (76-124)||(12635076-12635124)
chr1 (3-44)||(39927578-39927619)
chr1 (70-126)||(15492198-15492254)
chr1 (4-36)||(16262864-16262896)
[»] chr7 (4 HSPs)
chr7 (63-126)||(24770161-24770223)
chr7 (68-126)||(41553564-41553622)
chr7 (68-126)||(41553909-41553967)
chr7 (68-126)||(41554254-41554312)
[»] chr6 (6 HSPs)
chr6 (75-126)||(1933831-1933882)
chr6 (77-127)||(17237382-17237432)
chr6 (84-126)||(28981082-28981124)
chr6 (1-42)||(528404-528445)
chr6 (8-44)||(8496979-8497015)
chr6 (1-41)||(31296816-31296856)
[»] scaffold0009 (1 HSPs)
scaffold0009 (68-126)||(58206-58264)
[»] chr4 (5 HSPs)
chr4 (77-127)||(37188691-37188740)
chr4 (3-41)||(43853457-43853495)
chr4 (3-44)||(22300861-22300902)
chr4 (90-127)||(52978748-52978785)
chr4 (4-36)||(22038859-22038891)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 21237827 - 21237580
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaagatgacgataggaaaaatttgcattcagacgacgaaataacacaaagaaaaacacttgatatat 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||    
T  21237827 ctgcaacaagacgcgaagtcaaacaacgccccacaagatgacgataggaaaaatctgcacttagacgacgaaataacacaaaggaaaacacttgatatat 21237728  T
Q  101 ttgaaaataacttatttagattgaaatcactaaggccagcttatcaatattagatgattaacgaagattttcaattaaannnnnnnnnnnnnnngcatcg 200  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||    
T  21237727 ttggaaatcacttatttagattgaaatcactaaggccagcttatcaatattagatgattaacgaagattttcaattaa----ctttttttttttgcatcg 21237632  T
Q  201 cttggggttaatatctttttatttggcggtgttacaaattaagtaacaaagc 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21237631 cttggggttaatatctttttatttggcggtgttgcaaattaagtaacaaagc 21237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 3240341 - 3240283
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  3240341 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 3240283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8443563 - 8443606
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||    
T  8443563 ctgcaacaagacgcggaatcaaacaacgccgcacaagacgacga 8443606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 19876198 - 19876148
Alignment:
Q  77 cacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaat 127  Q
    ||||||||||||  |||||| ||| ||||||| ||||||||||||||||||    
T  19876198 cacaaagaaaaaaccttgatctatgtgaaaatcacttatttagattgaaat 19876148  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 26469338 - 26469379
Alignment:
Q  85 aaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||| ||||||||||| ||||||| |||||||||||||||||    
T  26469338 aaaaaacttgatatatgtgaaaatcacttatttagattgaaa 26469379  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 29617328 - 29617369
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    ||||||||||||||||||||||| |||| ||||||| |||||    
T  29617328 gcaacaagacgcgaaatcaaacagcgccgcacaagacgacga 29617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 40619204 - 40619253
Alignment:
Q  75 aacacaaagaaaaacacttgatatatttgaaaataacttatttagattga 124  Q
    |||||||| | ||| ||||||||||| ||||||| |||||||||||||||    
T  40619204 aacacaaaaagaaaaacttgatatatgtgaaaatcacttatttagattga 40619253  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 24461402 - 24461351
Alignment:
Q  75 aacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||| ||||||||||||||||| || |||| |||||||||||||||||    
T  24461402 aacacaaaaaaaaacacttgatatatgtggaaatcacttatttagattgaaa 24461351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 29574768 - 29574818
Alignment:
Q  75 aacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||| ||||||||||||||||| || |||| |||||||||||||||||    
T  29574768 aacacaaa-aaaaacacttgatatatgtggaaatcacttatttagattgaaa 29574818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 12648059 - 12648109
Alignment:
Q  76 acacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  12648059 acacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 12648109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 43397247 - 43397305
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||| ||||||||||| ||||||  |||||||||||||||||    
T  43397247 acgaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaa 43397305  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 12647977 - 12648018
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  12647977 gcaacaagacgagaaatcaaacaacgccgcacaagacgacga 12648018  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 19596020 - 19596061
Alignment:
Q  85 aaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||||||||||| ||||||| ||||||||| |||||||    
T  19596020 aaaacacttgatatatgtgaaaatcacttatttacattgaaa 19596061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 10332678 - 10332736
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  10332678 acgaaaaaacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 10332736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26510697 - 26510740
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    |||||||||||||| ||||||||||||| | |||||||||||||    
T  26510697 ctgcaacaagacgcaaaatcaaacaacgacgcacaagatgacga 26510740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 781371 - 781321
Alignment:
Q  77 cacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaat 127  Q
    ||||||||||||| || ||| ||| ||||||| ||||||||||||||||||    
T  781371 cacaaagaaaaaccctagatctatctgaaaatcacttatttagattgaaat 781321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 7036195 - 7036132
Alignment:
Q  61 tcagacgacgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||||||||| ||| ||||||||| | ||||||||| ||||||  |||||||||||||||||    
T  7036195 tcagacgacgaaatcaca-aaagaaaaaaa-ttgatatatgtgaaaaccacttatttagattgaaa 7036132  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10332602 - 10332639
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaaga 38  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10332602 ctgcaacaagacgcgaaatcaaacaatgccgcacaaga 10332639  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 29922015 - 29921957
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  29922015 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 29921957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 29971168 - 29971110
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  29971168 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 29971110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 50194410 - 50194468
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  50194410 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 50194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 12947414 - 12947464
Alignment:
Q  75 aacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaa 125  Q
    ||||||||  |||||||||||||||| || |||| ||||||||||||||||    
T  12947414 aacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaa 12947464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 12947331 - 12947371
Alignment:
Q  4 caacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  12947331 caacaagatgcgaaatcaaacaacgccgcacaagacgacga 12947371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 6063 - 5965
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatgacgataggaaaaat--ttgcattcagacgacgaaataacacaaagaaaaacacttgatatat 100  Q
    ||||||| |||||||||||||||||||| ||||||| ||||| |  | | ||  ||||| |||||||||||||| |||||||  ||||||||| ||||||    
T  6063 gcaacaatacgcgaaatcaaacaacgccgcacaagacgacga-acaacacatcattgcactcagacgacgaaatcacacaaaataaaacactttatatat 5965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 12635124 - 12635076
Alignment:
Q  76 acacaaagaaaaacacttgatatatttgaaaataacttatttagattga 124  Q
    |||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  12635124 acacaaaagaaaacacttgatatatgtgaaaatcacttatttagattga 12635076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 39927578 - 39927619
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  39927578 gcaacaagacgggaaatcaaacaacgccacacaagacgacga 39927619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 15492254 - 15492198
Alignment:
Q  70 gaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||| ||||||||  |||| ||||||||||| ||||||| | |||||||||||||||    
T  15492254 gaaaaaacacaaaagaaaaaacttgatatatgtgaaaatcatttatttagattgaaa 15492198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 16262896 - 16262864
Alignment:
Q  4 caacaagacgcgaaatcaaacaacgccccacaa 36  Q
    ||||||||||||||||||||||||||| |||||    
T  16262896 caacaagacgcgaaatcaaacaacgccgcacaa 16262864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 24770223 - 24770161
Alignment:
Q  63 agacgacgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||||||||| ||| ||||||||| | ||||||||| ||||||  |||||||||||||||||    
T  24770223 agacgacgaaatcaca-aaagaaaaaaatttgatatatgtgaaaaccacttatttagattgaaa 24770161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 41553564 - 41553622
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || ||||  ||||||||||||||||    
T  41553564 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaa 41553622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 41553909 - 41553967
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || ||||  ||||||||||||||||    
T  41553909 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaa 41553967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 41554254 - 41554312
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| ||||||||  |||||||||||||||| || ||||  ||||||||||||||||    
T  41554254 acgaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaa 41554312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 1933831 - 1933882
Alignment:
Q  75 aacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||| ||||    
T  1933831 aacacaaaagaaaaaacttgatatatgtgaaaataacttatttagatcgaaa 1933882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 17237382 - 17237432
Alignment:
Q  77 cacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaat 127  Q
    ||||||||||||  || ||| ||| ||||||||||||||||||||||||||    
T  17237382 cacaaagaaaaaacctagatctatgtgaaaataacttatttagattgaaat 17237432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 28981124 - 28981082
Alignment:
Q  84 aaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  28981124 aaaaacacttgatatatgtggaaatcacttatttagattgaaa 28981082  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 528404 - 528445
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaagatgac 42  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  528404 ctgcaacaagacacaaaatcaaacaacgccgcacaagatgac 528445  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 8497015 - 8496979
Alignment:
Q  8 aagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    |||||| |||||||||||||||| |||||||||||||    
T  8497015 aagacgagaaatcaaacaacgccgcacaagatgacga 8496979  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31296856 - 31296816
Alignment:
Q  1 ctgcaacaagacgcgaaatcaaacaacgccccacaagatga 41  Q
    ||||||||||| || ||||||||||||||| ||||||||||    
T  31296856 ctgcaacaagatgcaaaatcaaacaacgccgcacaagatga 31296816  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 58206 - 58264
Alignment:
Q  68 acgaaataacacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaa 126  Q
    |||||| | ||||||  |||||||||||||||| || |||| |||||||||||||||||    
T  58206 acgaaaaagcacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaa 58264  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 37188691 - 37188740
Alignment:
Q  77 cacaaagaaaaacacttgatatatttgaaaataacttatttagattgaaat 127  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||    
T  37188691 cacaaagaaaaa-actagatatatgtgaaaatcacttatttagattgaaat 37188740  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 43853495 - 43853457
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatga 41  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  43853495 gcaacaatacgcgaaatcaaacaacgccgcacaagatga 43853457  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 22300902 - 22300861
Alignment:
Q  3 gcaacaagacgcgaaatcaaacaacgccccacaagatgacga 44  Q
    |||||| ||||||||||||||||||||| ||||||| |||||    
T  22300902 gcaacaggacgcgaaatcaaacaacgccgcacaagacgacga 22300861  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 52978785 - 52978748
Alignment:
Q  90 acttgatatatttgaaaataacttatttagattgaaat 127  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  52978785 acttgatatatgtgaaaatcacttatttagattgaaat 52978748  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 22038859 - 22038891
Alignment:
Q  4 caacaagacgcgaaatcaaacaacgccccacaa 36  Q
    ||||||||||||||||||||||||||| |||||    
T  22038859 caacaagacgcgaaatcaaacaacgccacacaa 22038891  T

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