View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_high_24 (Length: 296)
Name: NF18384_high_24
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 41038371 - 41038104
Alignment:
| Q |
1 |
caattgtatttaacaaatgatagatgcatagttgtagaccaaacatttagcatctaagagaaattaattaactcaaacatggttaagcatggtctttatt |
100 |
Q |
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| T |
41038371 |
caattgtatttaacaaatgatagatgcatagttgtagaccaaacatttagcatgtaagagaaattaattaactcaaacatggt----------ctttatt |
41038282 |
T |
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| Q |
101 |
ttaaaacaaaatcacgtataggtcacacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttgtagttgttttcaa |
200 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038281 |
ttaaaacgaaatcccgtataggtcacacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttgtagttgttttcaa |
41038182 |
T |
|
| Q |
201 |
ttctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaac |
278 |
Q |
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| T |
41038181 |
ttctgaagtgctaattgaccatgaatggatatcatgtgctataccagttactgaagcagcagatagaccaaacctaac |
41038104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 41044374 - 41044141
Alignment:
| Q |
26 |
gcatagttgtagaccaaacatttagcatctaagagaaattaattaactcaaacatggt-taagcatggtctttattttaaaacaaaatcacgtataggtc |
124 |
Q |
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| T |
41044374 |
gcataattgtagaccaaacatttagcatgtaggagaaattaactaat----acatggtataagcatggtctttattttaaaagaaa-tcgcgtacaggtc |
41044280 |
T |
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| Q |
125 |
acacaagctgcttactagcagggtctttatttagaaataaagagttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatga |
224 |
Q |
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| T |
41044279 |
acacaagctgcttactagcagggtcttt--------------acttgtctgatgcactacttgtagttgttttcaattctgaaatgctaattgaccatga |
41044194 |
T |
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| Q |
225 |
atggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaa |
277 |
Q |
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| T |
41044193 |
atagatatcgtgtgctgttgcagttattgaagcaccagctagaccaagcctaa |
41044141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 41066388 - 41066288
Alignment:
| Q |
178 |
gcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagaccaaacctaa |
277 |
Q |
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| T |
41066388 |
gcgctgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagaccaaacctaa |
41066289 |
T |
|
| Q |
278 |
c |
278 |
Q |
| |
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| |
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| T |
41066288 |
c |
41066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 41066522 - 41066449
Alignment:
| Q |
86 |
agcatggtctttattttaaaacaaaatcacgtataggtcacacaagctgcttactagc-agggtctttatttaga |
159 |
Q |
| |
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|||| ||| |||||||||||| ||| |||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
41066522 |
agcagggtttttattttaaaagaaac-cacgtacaggtcacacaagctgcttactagcaaaggtctttatttaga |
41066449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 8488226 - 8488335
Alignment:
| Q |
169 |
ttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagac |
268 |
Q |
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|||| |||||| ||||||| |||||||||||| ||||| ||| | | ||||||||||||||| || |||| | |||||||||||||||| ||||||||| |
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| T |
8488226 |
ttgtctgatgcactgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagac |
8488325 |
T |
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| Q |
269 |
caaacctaac |
278 |
Q |
| |
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|||||||||| |
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| T |
8488326 |
caaacctaac |
8488335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 8495738 - 8495847
Alignment:
| Q |
169 |
ttgtttgatgcgctgcttgtagttgttttcaattctgaggtgctaattgaccatgaatggatatcatgtggtataccagttattgaagcagcagatagac |
268 |
Q |
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|||| |||||| ||||||| |||||||||||| ||||| ||| | | ||||||||||||||| || |||| | |||||||||||||||| ||||||||| |
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| T |
8495738 |
ttgtctgatgcactgcttgcagttgttttcaagtctgaagtggtcaatgaccatgaatggatgtcgtgtgcaaaaccagttattgaagcaccagatagac |
8495837 |
T |
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| Q |
269 |
caaacctaac |
278 |
Q |
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|||||||||| |
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| T |
8495838 |
caaacctaac |
8495847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 8488129 - 8488165
Alignment:
| Q |
121 |
ggtcacacaagctgcttactagcagggtctttattta |
157 |
Q |
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| T |
8488129 |
ggtcacacaagctgcttactagcagattctttattta |
8488165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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