View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_high_25 (Length: 273)

Name: NF18384_high_25
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_high_25
NF18384_high_25
[»] chr8 (6 HSPs)
chr8 (175-260)||(44620677-44620762)
chr8 (176-258)||(5075367-5075449)
chr8 (177-261)||(9186652-9186736)
chr8 (177-244)||(9186916-9186983)
chr8 (177-250)||(23811583-23811656)
chr8 (177-206)||(33748332-33748361)
[»] chr2 (10 HSPs)
chr2 (174-258)||(17948937-17949021)
chr2 (180-260)||(17946097-17946177)
chr2 (171-260)||(7744037-7744126)
chr2 (177-256)||(7745284-7745363)
chr2 (174-206)||(33190-33222)
chr2 (177-253)||(41157-41233)
chr2 (175-206)||(11021531-11021562)
chr2 (175-206)||(42880873-42880904)
chr2 (177-206)||(28248237-28248266)
chr2 (177-209)||(363739-363771)
[»] chr3 (11 HSPs)
chr3 (176-260)||(33051473-33051557)
chr3 (178-260)||(49494477-49494559)
chr3 (39-96)||(11024146-11024203)
chr3 (172-209)||(40963457-40963494)
chr3 (39-98)||(11015134-11015193)
chr3 (177-215)||(49496002-49496040)
chr3 (39-96)||(11005571-11005628)
chr3 (177-206)||(33111841-33111870)
chr3 (177-206)||(40508493-40508522)
chr3 (177-209)||(26447723-26447755)
chr3 (177-253)||(48635388-48635464)
[»] chr1 (14 HSPs)
chr1 (177-260)||(51121905-51121988)
chr1 (19-153)||(24416082-24416216)
chr1 (177-260)||(51123563-51123646)
chr1 (38-153)||(24310520-24310635)
chr1 (19-93)||(24367529-24367603)
chr1 (36-97)||(24340771-24340832)
chr1 (36-97)||(24353136-24353197)
chr1 (36-88)||(24323139-24323191)
chr1 (177-206)||(5784929-5784958)
chr1 (177-206)||(11152545-11152574)
chr1 (177-206)||(31803762-31803791)
chr1 (177-206)||(44159356-44159385)
chr1 (177-206)||(45379085-45379114)
chr1 (177-253)||(35478087-35478163)
[»] scaffold0006 (1 HSPs)
scaffold0006 (176-260)||(38287-38370)
[»] chr5 (14 HSPs)
chr5 (177-258)||(27350544-27350625)
chr5 (36-97)||(42561973-42562034)
chr5 (177-258)||(27349156-27349237)
chr5 (54-98)||(179417-179461)
chr5 (38-98)||(9120122-9120182)
chr5 (177-253)||(40330530-40330606)
chr5 (176-250)||(1344832-1344906)
chr5 (36-98)||(29688488-29688550)
chr5 (177-206)||(18726565-18726594)
chr5 (177-206)||(32089987-32090016)
chr5 (177-206)||(32835876-32835905)
chr5 (177-206)||(42619289-42619318)
chr5 (175-211)||(24498124-24498160)
chr5 (39-91)||(29696602-29696654)
[»] chr7 (7 HSPs)
chr7 (177-261)||(1547670-1547754)
chr7 (172-206)||(4321033-4321067)
chr7 (179-253)||(46810707-46810781)
chr7 (36-98)||(48884183-48884245)
chr7 (177-206)||(30108565-30108594)
chr7 (177-206)||(46994660-46994689)
chr7 (177-209)||(34784067-34784099)
[»] chr4 (29 HSPs)
chr4 (36-98)||(7878742-7878804)
chr4 (36-96)||(7790441-7790501)
chr4 (36-96)||(7908663-7908723)
chr4 (39-99)||(48156072-48156132)
chr4 (38-90)||(50666682-50666734)
chr4 (36-91)||(7771761-7771816)
chr4 (36-98)||(7773465-7773527)
chr4 (41-99)||(48147358-48147416)
chr4 (36-97)||(48864395-48864456)
chr4 (36-97)||(49038518-49038579)
chr4 (36-96)||(7786825-7786885)
chr4 (36-96)||(7813838-7813898)
chr4 (38-98)||(49043810-49043870)
chr4 (36-98)||(45371714-45371776)
chr4 (36-98)||(48853040-48853102)
chr4 (175-260)||(10371055-10371140)
chr4 (39-91)||(7237386-7237438)
chr4 (36-96)||(7800998-7801058)
chr4 (175-206)||(2828473-2828504)
chr4 (36-98)||(45384532-45384594)
chr4 (39-97)||(48863625-48863683)
chr4 (46-96)||(48903316-48903366)
chr4 (38-87)||(37826632-37826681)
chr4 (177-206)||(39085214-39085243)
chr4 (177-206)||(42879275-42879304)
chr4 (177-206)||(44992808-44992837)
chr4 (36-96)||(7766003-7766063)
chr4 (177-209)||(13450363-13450395)
chr4 (174-206)||(43778386-43778418)
[»] chr6 (5 HSPs)
chr6 (176-253)||(30639610-30639687)
chr6 (172-206)||(35174386-35174420)
chr6 (41-98)||(21016180-21016237)
chr6 (54-90)||(14197341-14197377)
chr6 (177-209)||(24662480-24662512)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 44620762 - 44620677
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||    
T  44620762 tagagtgaatcatcaacttcgtccctgaatttgcaagcatcggtcaaaatcgtccccaaattttgcaaaatatcaatttcgtccct 44620677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 5075367 - 5075449
Alignment:
Q  176 agagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcc 258  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||    
T  5075367 agagtgaatcatcaacttcgtccttgaatttgcaagcatcagccaaaatcgtccccaaattttgcgaaatatcaattttgtcc 5075449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 9186736 - 9186652
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcccta 261  Q
    |||||||||||||||| ||||| ||||||| |||| |||||| |||||||||||| |||| ||| ||||||||| || |||||||    
T  9186736 gagtgaatcatcaactccgtccttgaatttacaaggatcagccaaaatcgtccccaaattatgcgaaatatcaaattagtcccta 9186652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 9186983 - 9186916
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaa 244  Q
    |||||||||||||||| ||||| ||||||| |||| |||||| |||||||||||| |||| |||||||    
T  9186983 gagtgaatcatcaactccgtccttgaatttacaaggatcagccaaaatcgtccccaaattatgcaaaa 9186916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 23811656 - 23811583
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaa 250  Q
    |||| ||| |||||||||||||||||||| ||| | ||| || ||| |||||||| |||||| |||||||||||    
T  23811656 gagtaaattatcaacttcgtccctgaattcgcacggatcggccaaattcgtcccccaattttacaaaatatcaa 23811583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 33748332 - 33748361
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  33748332 gagtgaatcatcaacttcgtccctgaattt 33748361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 17949021 - 17948937
Alignment:
Q  174 ttagagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcc 258  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  17949021 ttagagtgaatcatcaacttcgtccatgaatttgcaagcatcagccaaaatcgtccccaaattttgcgaaatatcaatttcgtcc 17948937  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 17946097 - 17946177
Alignment:
Q  180 tgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  17946097 tgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccttaaattttgcaaaatatcaattttgtccct 17946177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 7744037 - 7744126
Alignment:
Q  171 attttagagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |  |||||||| |||||||||||||||||||    
T  7744037 atttaagagtgaatcatcaacttcgtccctgaatttgcaagcattaggcaaaatcgtctcaaaattttgcgaaatatcaatttcgtccct 7744126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 7745363 - 7745284
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgt 256  Q
    |||||||||||||| ||||||  |||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||    
T  7745363 gagtgaatcatcaatttcgtcattgaatttgtaagcatcagccaaaatcgtccccaaattttgcgaaatatcaatttcgt 7745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 33190 - 33222
Alignment:
Q  174 ttagagtgaatcatcaacttcgtccctgaattt 206  Q
    |||||||||||||||||||||||||||||||||    
T  33190 ttagagtgaatcatcaacttcgtccctgaattt 33222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 41233 - 41157
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    |||||||||||||||||||||||||||||| || |  || || ||| |||||||  |||| ||| ||||||||||||    
T  41233 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatatcaattt 41157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 11021531 - 11021562
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||||    
T  11021531 tagagtgaatcatcaacttcgtccctgaattt 11021562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 42880904 - 42880873
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||||    
T  42880904 tagagtgaatcatcaacttcgtccctgaattt 42880873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 28248266 - 28248237
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  28248266 gagtgaatcatcaacttcgtccctgaattt 28248237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 363771 - 363739
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||||||||||||||||||||| ||||||||||    
T  363771 gagtgaatcatcaacttcgtccttgaatttgca 363739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 33051557 - 33051473
Alignment:
Q  176 agagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||  ||||||||||||||||||||||||||||    
T  33051557 agagtgaatcatcaacttcgtccctaaatttgcaagcatcaaccaaaatcgtccctaaattttgcaaaatatcaatttcgtccct 33051473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 49494477 - 49494559
Alignment:
Q  178 agtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||| | ||||||||||||| |||||    
T  49494477 agtgaatcatcaacttcgtccctgaatttgcaagcatcaatcaaaatcgtccccaaattttacgaaatatcaatttcatccct 49494559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    |||||||| ||||| ||||| |||||||| |||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 40963494 - 40963457
Alignment:
Q  172 ttttagagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||| |||||||||||||||||||||||||||||||||    
T  40963494 ttttggagtgaatcatcaacttcgtccctgaatttgca 40963457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||||||   ||||| |||||||| |||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 49496040 - 49496002
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatc 215  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  49496040 gagtgaatcatcaacttcgtccttgaatttgcaaacatc 49496002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    |||||||  ||||| ||||| |||||||| |||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 33111841 - 33111870
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  33111841 gagtgaatcatcaacttcgtccctgaattt 33111870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 40508493 - 40508522
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  40508493 gagtgaatcatcaacttcgtccctgaattt 40508522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 26447723 - 26447755
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||||||||||||||||||||||| ||||||||    
T  26447723 gagtgaatcatcaacttcgtccctaaatttgca 26447755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 48635464 - 48635388
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    |||||||||||||| ||||||||||||||| || | ||| |  ||| |||||||  |||| ||| ||||||||||||    
T  48635464 gagtgaatcatcaatttcgtccctgaattttcacggatcggtcaaattcgtcccttaattatgcgaaatatcaattt 48635388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 51121905 - 51121988
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||    
T  51121905 gagtgaatcatcaacttcgtccttgaatttgcaagcatcagccaacatcgttcccaaattttgcaaaatatcaatttcgtccct 51121988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 24416216 - 24416082
Alignment:
Q  19 gaatggtatccattctgagaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaactccatccatgtgcattgaatc 118  Q
    |||||||||||||  ||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||| |||| |   | |  || |    
T  24416216 gaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatccttaaacctcaaaac 24416117  T
Q  119 ccatacacttagaaatcctctaaatatccataaac 153  Q
    ||||| ||| |||||||||||||||| ||||||||    
T  24416116 ccatagactgagaaatcctctaaatacccataaac 24416082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 51123646 - 51123563
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    |||||||||||||||||||||||||||||||||| ||| | | ||||| |||| | |||||||| |||||||||||||||||||    
T  51123646 gagtgaatcatcaacttcgtccctgaatttgcaatcattaaccaaaattgtcctcaaattttgcgaaatatcaatttcgtccct 51123563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 24310635 - 24310520
Alignment:
Q  38 aacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaactccatccatgtgcattgaatcccatacacttagaaatcct 137  Q
    ||||||||||||| | ||||| || ||||| ||||||||||||||||||||||||||||||  ||||  || | |   | |||||| ||| |||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 24310536  T
Q  138 ctaaatatccataaac 153  Q
    ||||||| ||||||||    
T  24310535 ctaaatacccataaac 24310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24367603 - 24367529
Alignment:
Q  19 gaatggtatccattctgagaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatat 93  Q
    |||||||||||||  | ||||||||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||    
T  24367603 gaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatat 24367529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24340832 - 24340771
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    ||||||||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24353197 - 24353136
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    ||||||||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 24323191 - 24323139
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcaccca 88  Q
    |||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  24323191 agaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 5784958 - 5784929
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  5784958 gagtgaatcatcaacttcgtccctgaattt 5784929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 11152545 - 11152574
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  11152545 gagtgaatcatcaacttcgtccctgaattt 11152574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 31803791 - 31803762
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  31803791 gagtgaatcatcaacttcgtccctgaattt 31803762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 44159385 - 44159356
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  44159385 gagtgaatcatcaacttcgtccctgaattt 44159356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 45379085 - 45379114
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  45379085 gagtgaatcatcaacttcgtccctgaattt 45379114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 35478087 - 35478163
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    |||||||||||||||||| ||||||||||| || |  || || ||| | |||||  |||| ||||||||||||||||    
T  35478087 gagtgaatcatcaacttcatccctgaattttcacgggtcggccaaattagtccctcaattatgcaaaatatcaattt 35478163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 38370 - 38287
Alignment:
Q  176 agagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||| |||||||||||    
T  38370 agagtgaatcatcaacttcgtccctgaatttgcaagcatcaaccaaaatcgtccccaaattttgcgaaatatc-atttcgtccct 38287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 27350625 - 27350544
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcc 258  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||  |||||||||||||||||    
T  27350625 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagccaaaatcgatcccaaattttgtgaaatatcaatttcgtcc 27350544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 42561973 - 42562034
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    ||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 27349156 - 27349237
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcc 258  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||||||| || | |||||||| ||||||| |||| ||||    
T  27349156 gagtgaatcatcaacttcgtccttgaagttgcaaacatcaaccaaaatcgacctcaaattttgcgaaatatcgattttgtcc 27349237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 179461 - 179417
Alignment:
Q  54 caagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  179461 caagatgaatgcactttgtattctttcatcacccatatttcaact 179417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 9120182 - 9120122
Alignment:
Q  38 aacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||||||  | ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaact 9120122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 40330606 - 40330530
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    |||||||||||||||||||||||||||||| || |  || || |||||||||||  |||| ||| ||||||||||||    
T  40330606 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaaatcgtccctcaattatgcgaaatatcaattt 40330530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 1344906 - 1344832
Alignment:
Q  176 agagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaa 250  Q
    ||||||||||||||| |||||||||||||||||| | ||| |  ||| | |||||| |||||| | |||||||||    
T  1344906 agagtgaatcatcaatttcgtccctgaatttgcatgaatcggtcaaatttgtcccccaattttacgaaatatcaa 1344832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 29688550 - 29688488
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||| ||||| || || ||||| || ||||||||||||| ||||||||||||||| ||||||    
T  29688550 agaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaact 29688488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 18726565 - 18726594
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  18726565 gagtgaatcatcaacttcgtccctgaattt 18726594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 32090016 - 32089987
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  32090016 gagtgaatcatcaacttcgtccctgaattt 32089987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 32835876 - 32835905
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  32835876 gagtgaatcatcaacttcgtccctgaattt 32835905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 42619289 - 42619318
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  42619289 gagtgaatcatcaacttcgtccctgaattt 42619318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 24498160 - 24498124
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaatttgcaag 211  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  24498160 tagagtgaatcattaacttcgtccgtgaatttgcaag 24498124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatat 91  Q
    |||||||| ||||| ||||| || ||||||||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 1547754 - 1547670
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtcccta 261  Q
    |||||||||||||||||||||| |||||||||||| |||||  |||||||||  | ||||||||||||||||||||| |||||||    
T  1547754 gagtgaatcatcaacttcgtccatgaatttgcaagtatcagtcaaaatcgtcttcaaattttgcaaaatatcaattttgtcccta 1547670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 4321033 - 4321067
Alignment:
Q  172 ttttagagtgaatcatcaacttcgtccctgaattt 206  Q
    |||| ||||||||||||||||||||||||||||||    
T  4321033 tttttgagtgaatcatcaacttcgtccctgaattt 4321067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 46810707 - 46810781
Alignment:
Q  179 gtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    |||||||||||||||||||||||||||| || | ||| || ||| | |||||  |||| ||| ||||||||||||    
T  46810707 gtgaatcatcaacttcgtccctgaattttcacggatcggccaaattagtccctcaattatgcgaaatatcaattt 46810781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 48884245 - 48884183
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||||| ||||| |||||   |||||| |||||||||||||||||| |||| ||||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaact 48884183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 30108565 - 30108594
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  30108565 gagtgaatcatcaacttcgtccctgaattt 30108594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 46994660 - 46994689
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  46994660 gagtgaatcatcaacttcgtccctgaattt 46994689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 34784067 - 34784099
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||||||||||||||||||||| ||||||||||    
T  34784067 gagtgaatcatcaacttcgtccttgaatttgca 34784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 7878804 - 7878742
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaact 7878742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7790501 - 7790441
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||    
T  7790501 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 48156072 - 48156132
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaactc 99  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactc 48156132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  38 aacaagagttttagttcaagatgaatgcacattgtattctttcatcacccata 90  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 7771816 - 7771761
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatat 91  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 7773465 - 7773527
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    |||||||||| |||| | ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaact 7773527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 48147358 - 48147416
Alignment:
Q  41 aagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaactc 99  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactc 48147416  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 48864456 - 48864395
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    ||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  48864456 agaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||| |||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||||||| ||| | |||||| ||||||| ||||||||||||||||||||||| ||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||| ||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 49043810 - 49043870
Alignment:
Q  38 aacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||| ||||| || || |||||||| ||||||||||||||||||||||| ||||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaact 49043870  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 45371714 - 45371776
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||| ||| ||||| ||||| |||||||| |||||||||||||| |||||||| ||||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaact 45371776  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 48853102 - 48853040
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    ||||||||||| ||||| ||||| ||| |||| |||||||||||||| |||||||| ||||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaact 48853040  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 10371055 - 10371140
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaatttcgtccct 260  Q
    ||||||||| ||||||||| |||||||||||| || || || |||||| | |||||  |||| ||| ||||||||||||| |||||    
T  10371055 tagagtgaaccatcaacttagtccctgaattttcacgcgtcggctaaattagtccctcaattatgcgaaatatcaatttcatccct 10371140  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatat 91  Q
    |||||||||||||| ||| | |||||||  |||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||||||||||| | ||||| |||||||| ||||| ||||||| ||||||||| ||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 2828504 - 2828473
Alignment:
Q  175 tagagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||||    
T  2828504 tagagtgaatcatcaacttcgtccctgaattt 2828473  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 45384532 - 45384594
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| ||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 48863683 - 48863625
Alignment:
Q  39 acaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaac 97  Q
    |||||||||||| | ||||||||||||||   |||||||| |||||||||||| |||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaac 48863625  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  46 ttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    ||||||| |||||  ||||||| ||||||||||||||||||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  38 aacaagagttttagttcaagatgaatgcacattgtattctttcatcaccc 87  Q
    ||||||||| ||||| ||||| |||||||  |||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 39085243 - 39085214
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  39085243 gagtgaatcatcaacttcgtccctgaattt 39085214  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 42879275 - 42879304
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  42879275 gagtgaatcatcaacttcgtccctgaattt 42879304  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 44992808 - 44992837
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||||||||    
T  44992808 gagtgaatcatcaacttcgtccctgaattt 44992837  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  36 agaacaagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaa 96  Q
    |||||||| || ||||| || || |||| ||| ||||||||||||||||||||||| ||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 13450395 - 13450363
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||||||||||||||||||||| ||||||||||    
T  13450395 gagtgaatcatcaacttcgtccttgaatttgca 13450363  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 43778386 - 43778418
Alignment:
Q  174 ttagagtgaatcatcaacttcgtccctgaattt 206  Q
    ||||||||||||||||||||||||| |||||||    
T  43778386 ttagagtgaatcatcaacttcgtccttgaattt 43778418  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 30639610 - 30639687
Alignment:
Q  176 agagtgaatcatcaacttcgtccctgaatttgcaagcatcagctaaaatcgtccccgaattttgcaaaatatcaattt 253  Q
    ||||||||||||||||||||||||||||||| || |  || || ||| | |||||  |||| ||||||||||||||||    
T  30639610 agagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattagtccctcaattatgcaaaatatcaattt 30639687  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 35174386 - 35174420
Alignment:
Q  172 ttttagagtgaatcatcaacttcgtccctgaattt 206  Q
    |||| ||||||||||||||||||||||||||||||    
T  35174386 tttttgagtgaatcatcaacttcgtccctgaattt 35174420  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 21016237 - 21016180
Alignment:
Q  41 aagagttttagttcaagatgaatgcacattgtattctttcatcacccatatatcaact 98  Q
    |||||| ||||| ||||| ||||| || |||||||||||||| |||||||| ||||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaact 21016180  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 14197341 - 14197377
Alignment:
Q  54 caagatgaatgcacattgtattctttcatcacccata 90  Q
    |||||||||||||  ||||||||||||||||||||||    
T  14197341 caagatgaatgcattttgtattctttcatcacccata 14197377  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 24662480 - 24662512
Alignment:
Q  177 gagtgaatcatcaacttcgtccctgaatttgca 209  Q
    |||||||||||||||||||||| ||||||||||    
T  24662480 gagtgaatcatcaacttcgtccttgaatttgca 24662512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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