View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_high_5 (Length: 568)
Name: NF18384_high_5
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 10078087 - 10078394
Alignment:
| Q |
1 |
catatttaccctaaaatgcctttggtgcaaaatatcatgcttcaacattttatccacaagaaatttttgaacttaattaaaaatgagaataccataagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||| |
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| T |
10078087 |
catatttaccctaaaatgcctttggtgcaaaatatcatgcttcaacattttatccacaagagatttctgaacttacttaaatatgagaataccataagac |
10078186 |
T |
|
| Q |
101 |
cattctcaatgggatggtatcgcattttgaagacttggtacctattatatatccttattatggagaannnnnnnnggggtcttataagaccca-attttt |
199 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
10078187 |
catcctcaatgggatggtatcacattttgaagacttggtacctattagatatccttattatggggaatttttttt-tggtcttataagacccagtttttt |
10078285 |
T |
|
| Q |
200 |
taatatttaaaatttaaaatgtaatgatataaaaatgatagttgaggtaccatccttaaatttgcatgagatgttgggttgaagggattatgtggttatt |
299 |
Q |
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||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10078286 |
taatattaaaaatttgaaatgtaatgatataaaattgataattgaggtaccatcctcaaatttgcatgagatgttggattgaagggattatgtggttatt |
10078385 |
T |
|
| Q |
300 |
agatactct |
308 |
Q |
| |
|
||||||||| |
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| T |
10078386 |
agatactct |
10078394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 551
Target Start/End: Original strand, 10078802 - 10078872
Alignment:
| Q |
481 |
taatgcacatatgtcatattaatgcattattatttagttacaatatgtctgtggcaataatccttttaatt |
551 |
Q |
| |
|
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| T |
10078802 |
taatgcacatatgtcattttaatgcattattatttagttacaatatgcctgtgacaataatccttttaatt |
10078872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 9491885 - 9491848
Alignment:
| Q |
195 |
ttttttaatatttaaaatttaaaatgtaatgatataaa |
232 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||| |
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| T |
9491885 |
ttttttaatattaaaaaattaaaatgtaatgatataaa |
9491848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 4874997 - 4874959
Alignment:
| Q |
194 |
attttttaatatttaaaatttaaaatgtaatgatataaa |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
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| T |
4874997 |
attttttaatatttaaaaattaaaatgtaatgatataaa |
4874959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 19900261 - 19900223
Alignment:
| Q |
195 |
ttttttaatatttaaaatttaaaatgtaatgatataaaa |
233 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
19900261 |
ttttttaatattaaaaaattaaaatgtaatgatataaaa |
19900223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 12734037 - 12734074
Alignment:
| Q |
195 |
ttttttaatatttaaaatttaaaatgtaatgatataaa |
232 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |
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|
| T |
12734037 |
ttttttaatattaaaaaattaaaatgtaatgatataaa |
12734074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 6761498 - 6761461
Alignment:
| Q |
195 |
ttttttaatatttaaaatttaaaatgtaatgatataaa |
232 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |
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|
| T |
6761498 |
ttttttaatattaaaaaattaaaatgtaatgatataaa |
6761461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 39055157 - 39055193
Alignment:
| Q |
196 |
tttttaatatttaaaatttaaaatgtaatgatataaa |
232 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |
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|
| T |
39055157 |
tttttaatattaaaaaattaaaatgtaatgatataaa |
39055193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 42831641 - 42831677
Alignment:
| Q |
197 |
ttttaatatttaaaatttaaaatgtaatgatataaaa |
233 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||| |
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| T |
42831641 |
ttttaatattaaaaaattaaaatgtaatgatataaaa |
42831677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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