View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18384_low_10 (Length: 487)
Name: NF18384_low_10
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 23 - 471
Target Start/End: Original strand, 30769655 - 30770103
Alignment:
| Q |
23 |
gatcacgcgttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctcatgtgcagctacggaggccacataatgccgcg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30769655 |
gatcacgcgttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctaatgtgcagctacggaggccacataatgccgcg |
30769754 |
T |
|
| Q |
123 |
ccctcacgataagtctttatgttatgtaggcggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcacgcctttcgaga |
222 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
30769755 |
ccctcatgataagtctctatgttatgtaggtggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcgcgtctttcgaga |
30769854 |
T |
|
| Q |
223 |
acaattctcaatggaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataaca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30769855 |
acaattctcaatggaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataaca |
30769954 |
T |
|
| Q |
323 |
tgattgaagaatatgatcgtatagcatctgcatcttctaccatgaaaccttcatcatcaagactaagagtgttcttgttcttcacaaaaccagagtccac |
422 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
30769955 |
tgattgaagaatatgatcgtatagcatcggcatcttctacaatgaaaccttcatcatcaagactaagagtgtttttgttcttcacaaaaccagataccac |
30770054 |
T |
|
| Q |
423 |
actttcaatgggatcacttcttgatgatgcaaaatctgagacatggttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30770055 |
actttcaatgggatcacttcttgatgatgcaaaatctgagacatggttt |
30770103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 44884434 - 44884380
Alignment:
| Q |
236 |
gaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcat |
290 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
44884434 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
44884380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University