View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_11 (Length: 477)
Name: NF18384_low_11
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 32269272 - 32268906
Alignment:
| Q |
8 |
tttattttactaaattatttctcatccactctttcaactctatcatattcaacttcatctatcatttatctccctctcaccaatcttacaaatttatacc |
107 |
Q |
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| T |
32269272 |
tttattttactcaattatttctcatcgactctttcaactctatcatattcaacttcatctatcatttatctccctctcaccagtcttacaaatttatacc |
32269173 |
T |
|
| Q |
108 |
catgtggtatttttcttaaaccttttttctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaagtgtgcaatgaccgtcaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269172 |
catgtggtatttttcttaaaccttttttctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaagtgtgcaatgaccgtcaag |
32269073 |
T |
|
| Q |
208 |
gttgcaaccttgggcatgggtggaatcggtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttcttaacttgctat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32269072 |
gttgcaaccttgggcatgggtggaatcggtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttattaacttgctat |
32268973 |
T |
|
| Q |
308 |
atgtttttct--cttctctttattacatacattttctttaccctatcttttccttaataaattttag |
372 |
Q |
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||| |||||| || ||||||||| |||||||||| || |||||||||||||||| ||||| ||||| |
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| T |
32268972 |
atggttttctagctcctctttattgcatacatttttttcaccctatcttttccttgataaactttag |
32268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 137 - 426
Target Start/End: Complemental strand, 32275452 - 32275157
Alignment:
| Q |
137 |
tcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaag-tgtgcaatgaccgtcaaggttgcaaccttgggcatgggtggaatcg |
235 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaaggtgtgcaatgaccgtcaaggctgcaagcttgggcatgggtggaatcg |
32275353 |
T |
|
| Q |
236 |
gtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttcttaacttgctatatgt----ttttctcttctctttattac |
331 |
Q |
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||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
32275352 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttctcttctctttattgc |
32275253 |
T |
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| Q |
332 |
atacattttcttt-accctatcttttccttaataaattttagttttcacctcctccttaattaatactttagatgaaacgatgttacagcattttg |
426 |
Q |
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| T |
32275252 |
atacattttttttcaccctatcttttccttaataaattttagttttgacctcctccttaattaatactttagatgaaataatgttacagcattttg |
32275157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 131 - 435
Target Start/End: Complemental strand, 32809192 - 32808894
Alignment:
| Q |
131 |
tttttctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaag-tgtgcaatgaccgtcaaggttgcaaccttgggcatgggtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |
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| T |
32809192 |
tttttctcaagtatggaggagcctcacgacaaggagaccacaacaccgttggaggcaaggtgtgcaa---------aggctgcaaccttgggcatgggtg |
32809102 |
T |
|
| Q |
230 |
gaatcggtaaacaggtagtgaa-tctatttatgcattttgttcatcacttgctcttgctttctcttcttaacttgctatatgtttttctcttctctttat |
328 |
Q |
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||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32809101 |
gaatcggtaaacaggtagtgatctctatctctgcattttgttcatcacttgctcttgctttctcttcttaacttgctatatgtttttctcttctctttat |
32809002 |
T |
|
| Q |
329 |
tacatacattttcttt-accctatcttttccttaataaattttagttttcacctcctccttaattaatactttagatgaaacgatgttacagcattttgc |
427 |
Q |
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| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32809001 |
tgcatacattttttttcaccctatcttttacttaataaattttagttttcacctcctccttaattaatactttagatgaaatgatgttacagcattttgc |
32808902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 32809326 - 32809240
Alignment:
| Q |
20 |
aattatttctcatcca-ctctttcaactctatcatattcaacttcatctatcatttatctccctctcaccaatcttacaaatttata |
105 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32809326 |
aattatttctcatccatctctttcaactctatcatattcaacttcatctatcatttatctccctctcaccaatcttacaaatatata |
32809240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 4975668 - 4975705
Alignment:
| Q |
260 |
tgcattttgttcatcacttgctcttgctttctcttctt |
297 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||| |
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| T |
4975668 |
tgcattttgttcttcacttgctcttgctttcttttctt |
4975705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 4985355 - 4985392
Alignment:
| Q |
260 |
tgcattttgttcatcacttgctcttgctttctcttctt |
297 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |
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| T |
4985355 |
tgcattttgttcttcacttgctcttgctttcttttctt |
4985392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 4961228 - 4961264
Alignment:
| Q |
215 |
ccttgggcatgggtggaatcggtaaacaggtagtgaa |
251 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
4961228 |
ccttgggcatgggtggaatcggtaaataggtaatgaa |
4961264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 5030501 - 5030537
Alignment:
| Q |
215 |
ccttgggcatgggtggaatcggtaaacaggtagtgaa |
251 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
5030501 |
ccttgggcatgggtggaatcggtaaataggtaatgaa |
5030537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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