View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_12 (Length: 447)

Name: NF18384_low_12
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_12
NF18384_low_12
[»] chr4 (8 HSPs)
chr4 (261-430)||(24056783-24056952)
chr4 (251-295)||(22905032-22905076)
chr4 (251-295)||(22956700-22956744)
chr4 (251-295)||(43441788-43441832)
chr4 (252-295)||(44645346-44645389)
chr4 (353-413)||(26728379-26728439)
chr4 (223-299)||(26728493-26728569)
chr4 (237-309)||(34821674-34821746)
[»] chr8 (2 HSPs)
chr8 (243-301)||(4903479-4903537)
chr8 (244-297)||(3961182-3961235)
[»] chr7 (1 HSPs)
chr7 (243-283)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 24056783 - 24056952
Alignment:
Q  261 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac 24056882  T
Q  361 ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctcacctt 430  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24056883 ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctcacctt 24056952  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  251 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 295  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  251 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 295  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  251 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 295  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  252 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 295  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
Q  353 cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca 413  Q
    |||||||||||||||||||||| |||||||  || | ||| ||| ||||||||| ||||||    
T  26728439 cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca 26728379  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  223 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 299  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  237 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 309  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  243 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 301  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  244 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 297  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  243 aagaagtttccaagaaaaagccaccactttggacggagctg 283  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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