View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_13 (Length: 443)
Name: NF18384_low_13
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 33907938 - 33908356
Alignment:
| Q |
18 |
ccttcaagtattggaaagttgaagaaactgaaatttcttgcattgcaagtttgtctgtttaatggaacattcccggacgagattggagatttggcgaatc |
117 |
Q |
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| T |
33907938 |
ccttcaagtattggaaagttaaagaaactgagatttcttgcattgcaagtttgtctgtttaatggaacattcccggatgagattggagatttggtgaatc |
33908037 |
T |
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| Q |
118 |
ttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggtgagttggaccaagttgagtaaattgaaggttttttatatgtatgtctg |
217 |
Q |
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| T |
33908038 |
ttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggtgagctggaccaagttgagtaaattgaaggtgttttatatgtatgtctg |
33908137 |
T |
|
| Q |
218 |
caatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcacaaaatgggttgactgggaaaattcctagtggt |
317 |
Q |
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| T |
33908138 |
caatctttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcccaaaatgggttgactgggaaaattcctagtggt |
33908237 |
T |
|
| Q |
318 |
ttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatctttctggagagttacctgatgtggttgaagcgttaaacttgactaacattg |
417 |
Q |
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| T |
33908238 |
ttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatctttctggagagttacctgatgtggttgaagcgttaaacttgactaacatcg |
33908337 |
T |
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| Q |
418 |
agcttacgcagaataatct |
436 |
Q |
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| T |
33908338 |
agcttacgcagaataatct |
33908356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 24793193 - 24793027
Alignment:
| Q |
171 |
agttggaccaagttgagtaaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggagg |
270 |
Q |
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| T |
24793193 |
agtttgaccaagttgaacaaattgaaggttctttatgtttatggctctaacttgattggtgaaatacctgaaaaaattggagatatggtttctttggaga |
24793094 |
T |
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| Q |
271 |
atttggatatttcacaaaatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatct |
337 |
Q |
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| T |
24793093 |
cgttggatatgtcaagaaatggtttaactggtgaaattcctagtggtttgttcatgctgaagaatct |
24793027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 349
Target Start/End: Original strand, 33882895 - 33883043
Alignment:
| Q |
188 |
taaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcacaa |
287 |
Q |
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| T |
33882895 |
taaattgaagttgttttatatgcatgactgcaacctgtttggtgaaatgcctgaaacaatag--gaaatggtttc---------tttggatatttcacaa |
33882983 |
T |
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| Q |
288 |
aatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatcttagaagattgtt |
349 |
Q |
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| T |
33882984 |
aa--cgttgagtgaaaaaattcctagcggtttgttcatgctgaagaatcacagcagattgtt |
33883043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 33915449 - 33915485
Alignment:
| Q |
364 |
atctttctggagagttacctgatgtggttgaagcgtt |
400 |
Q |
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| T |
33915449 |
atctttctggagagatacctgatgtggttgaagcgtt |
33915485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 24792988 - 24792955
Alignment:
| Q |
304 |
aaattcctagtggtttgttcatgttgaagaatct |
337 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
24792988 |
aaattcctagtggtttgttcatgctgaagaatct |
24792955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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