View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_14 (Length: 438)
Name: NF18384_low_14
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 45793684 - 45793279
Alignment:
| Q |
16 |
atgaatcactcagagcacataatatactatactcctaaattctaaattatatccccaaacgcataccaatagtcagttaatataccaatcaaatctccaa |
115 |
Q |
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| T |
45793684 |
atgaatcactcagagcacataatatactatactcctaaattctaaattatatccccaaacgcataccaatagtcagttaatataccaaccaaatctccaa |
45793585 |
T |
|
| Q |
116 |
ctctgaaaaacatggcagccaagactatgaaaaaatggcaatctagtactctaatcggcttagctttagatttgttaagaaaaataattgaaatttaaca |
215 |
Q |
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| T |
45793584 |
ctctgaaaaacatggcagccaagactatgaaaaaatggcaatctagtactctaatcggcttagctttagatttgttaagaaaaataattgaaatttaaca |
45793485 |
T |
|
| Q |
216 |
tttaacagttaaagccttttaccttcccaattactctctcattattagtccaaaaatttgtaagtttaactatttgatttcatcccttccccttcttaca |
315 |
Q |
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| T |
45793484 |
tttaacagttaaagccttttaccttccgaattactctctcattattagtccaaaaatttgtaagtttaactatttgatttcatcccttccccttcttaca |
45793385 |
T |
|
| Q |
316 |
ttcaatctcattctgttaaacttcaaagcttccaatgtagcttaaatcaggagatcactataatccaaaagataaattgtttggcatgactctataatct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45793384 |
ttcaatctcattctgttaaacttcaaagcttccaatgtagcttaaatcaggagatcactataatccaaaagataaattgtttggcatgactctataatct |
45793285 |
T |
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| Q |
416 |
atatgt |
421 |
Q |
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|||||| |
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| T |
45793284 |
atatgt |
45793279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 45793251 - 45793214
Alignment:
| Q |
374 |
tataatccaaaagataaattgtttggcatgactctata |
411 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
45793251 |
tataatccaaaagataaattgtttgacatgactctata |
45793214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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