View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_17 (Length: 372)
Name: NF18384_low_17
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 43619498 - 43619282
Alignment:
| Q |
19 |
aattatgatgaccgattgtaggaggtcatataaggaggttcattggtggaacnnnnnnngggggttcatattaggggcaccttaaatcagaccctcaaat |
118 |
Q |
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| T |
43619498 |
aattatgatgatcggttgtagcaggtcatataaggaggttcattggtggacctttttttggggtct-atattaggggcaccttaaatc------tcaaat |
43619406 |
T |
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| Q |
119 |
taatttttcgttgatgctttgattgccacgtcaaataaaatccgagttgtcacatgttagaatctatggtgctatctattccttattttataattctcat |
218 |
Q |
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| T |
43619405 |
tagtttttcgttggtgctttgattgccacgtcaaataaaatccgagttgtcacatgttagaatctatggtgctatctattccttattttataattctcat |
43619306 |
T |
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| Q |
219 |
ttcgattgactacaatagcaaatt |
242 |
Q |
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| T |
43619305 |
ttcgattgactacaatagcaaatt |
43619282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 43618506 - 43618379
Alignment:
| Q |
234 |
tagcaaattccttcttttctctttgctaatgtccgttacaattaagtaaaaaccatctctt-----ctattataaagtatgtttagaatagagtataatc |
328 |
Q |
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| T |
43618506 |
tagcaaattccttcttttctctttgctaatgtccgttacaattaagtaaaaaccatctcttgtcttctgttataaagtatgtttagaatagagtataatc |
43618407 |
T |
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| Q |
329 |
aactcattgtattttctgatttggttat |
356 |
Q |
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| T |
43618406 |
aacttattgtattttctgatttggttat |
43618379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 26142166 - 26142240
Alignment:
| Q |
134 |
gctttgattgccacgtcaaataaaatccgagttgtcacatgttagaatctatggtgctatctattccttatttta |
208 |
Q |
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| T |
26142166 |
gctttgattgttacgtcaaataaaatctgagttgtcacatgttagaatccccggtgctttatattccttatttta |
26142240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 26142276 - 26142322
Alignment:
| Q |
248 |
ttttctctttgctaatgtccgttacaattaagtaaaaaccatctctt |
294 |
Q |
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| T |
26142276 |
ttttctctttgccgatgtccgttacaattaagtaaaaaccatctctt |
26142322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 16359777 - 16359728
Alignment:
| Q |
19 |
aattatgatgaccgattgtaggaggtcatataaggaggttcattggtgga |
68 |
Q |
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| T |
16359777 |
aattatgatgacctgttgtagcaggtcatataaggaggttcattggtgga |
16359728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16362522 - 16362571
Alignment:
| Q |
19 |
aattatgatgaccgattgtaggaggtcatataaggaggttcattggtgga |
68 |
Q |
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| T |
16362522 |
aattatgatgacctgttgtagcaggtcatataaggaggttcattggtgga |
16362571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 32220954 - 32220877
Alignment:
| Q |
22 |
tatgatgaccgattgtaggaggtcatataaggaggttcattggtggaacnnnnnnngggggttcatattaggggcacc |
99 |
Q |
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| T |
32220954 |
tatgatgaccggttgtagcaggtcatacaagaaggttcattggtggaccttttttggggggtccatattaggggcacc |
32220877 |
T |
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