View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_2 (Length: 601)
Name: NF18384_low_2
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 26418297 - 26418674
Alignment:
| Q |
10 |
acatcatcaaccacgataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccact |
109 |
Q |
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| T |
26418297 |
acatcataaaccacgataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccact |
26418396 |
T |
|
| Q |
110 |
ggtacctaacctgtacccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattc |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
26418397 |
ggtacctaacttgtacccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggccactgaccctttagcatgcattacaaattc |
26418496 |
T |
|
| Q |
210 |
cactaaccatataaaacctatgaaacact-acacagacacaacactgacatatcgacactgataataatttattttaagaaatggaataattgaatgcaa |
308 |
Q |
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| T |
26418497 |
cagtaaccatatcaaaccaatgaaacactgacacagacacaacac-------tcgacactgataataatttattttaagaaatgggataattgaatgcaa |
26418589 |
T |
|
| Q |
309 |
tcacatgtgttggtctcagacattgacacttgttaaacaccagacacaccttcaatcaaaaagtgtgagcaagcactacaaagtt |
393 |
Q |
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| T |
26418590 |
tcacacgtgttggtctcagacattgacacttgttaaacactagacacaccttcaatcaaaaagtgtgagcaagcactacaaagtt |
26418674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 382 - 586
Target Start/End: Original strand, 26420795 - 26420999
Alignment:
| Q |
382 |
cactacaaagttatgaacacattgactaacccataaattatactatatgctattataagctcaaatccattttgttaattaaatgtacattctacacatc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26420795 |
cactacaaagttatgaacacattgactaacccataaattatactatatgctattataagctcaaatccattttgttaattaaatgtacattcgacacatc |
26420894 |
T |
|
| Q |
482 |
aatttataactcgtctataaccaaaacagattaaaatttacactaaaatgcaaagcaactaaaatcaatgtttacatgaagcatgaacctagatagcaag |
581 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26420895 |
aatttataactcgtctataaccaaaacatattaaaatttacactaaaatgcaaagcaactaaaatcaatgtttacatgaagcatgaacctagatagcaag |
26420994 |
T |
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| Q |
582 |
ttgat |
586 |
Q |
| |
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||||| |
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| T |
26420995 |
ttgat |
26420999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 27981926 - 27981460
Alignment:
| Q |
18 |
aaccacgataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactg---gtac |
114 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||| |||| |
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| T |
27981926 |
aaccaccacaggagaccaaccaaacctccttagaccttcacagtcac------cacctccatcatccttcactgacaaacaaaacaaccaccaccagtac |
27981833 |
T |
|
| Q |
115 |
ctaacctgtacccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattccacta |
214 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||| ||||||| |
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| T |
27981832 |
ctaacttgtacccatcctcttgaaaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccacta |
27981733 |
T |
|
| Q |
215 |
accatataaaacc---tatgaa------acact-aca-cagacacaacactgacatatcg-------acactgataataatttattttaagaaatggaat |
296 |
Q |
| |
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||||||| ||||| |||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
27981732 |
accatatcaaacctattatgaacctatgacactgacaccagacacaacactgacatatcgatactcaacactgataataatttatttgaagaaatgggat |
27981633 |
T |
|
| Q |
297 |
aattgaatgcaatcacatgtgttggtctcagacattgacacttgttaaacaccagacacaccttcaatcaaaaagtgtgagcaagcactacaaag---tt |
393 |
Q |
| |
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| |||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||||| ||| | ||| ||||| || || |
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| T |
27981632 |
agttgaatgcaatcacatgtgtcggtctcagacacaaacacgtgttagacaccagacacaccttagatcaaaaaaagtgtg--agccctacagagttatt |
27981535 |
T |
|
| Q |
394 |
atgaacacattgactaacccataaattatactat--------atgctattataagctcaaatccattttgttaat |
460 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
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| T |
27981534 |
atgaacacgttgactaacccataaattatactatagtataggatactattataagctcaagtccattttgttaat |
27981460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 28068456 - 28067990
Alignment:
| Q |
18 |
aaccacgataggagaccaaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactg---gtac |
114 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||| |||| |
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| T |
28068456 |
aaccaccacaggagaccaaccaaacctccttagaccttcacagtcac------cacctccatcatccttcactgacaaacaaaacaaccaccaccagtac |
28068363 |
T |
|
| Q |
115 |
ctaacctgtacccatcctctcgaaaccaacacctcttcttcaccattcccgttgacaccacaggctactgaccctttagcacgcattacaaattccacta |
214 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||| ||||||| |
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| T |
28068362 |
ctaacttgtacccatcctcttgaaaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccacta |
28068263 |
T |
|
| Q |
215 |
accatataaaacc---tatgaa------acact-aca-cagacacaacactgacatatcg-------acactgataataatttattttaagaaatggaat |
296 |
Q |
| |
|
||||||| ||||| |||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
28068262 |
accatatcaaacctattatgaacctatgacactgacaccagacacaacactgacatatcgatactcaacactgataataatttatttgaagaaatgggat |
28068163 |
T |
|
| Q |
297 |
aattgaatgcaatcacatgtgttggtctcagacattgacacttgttaaacaccagacacaccttcaatcaaaaagtgtgagcaagcactacaaag---tt |
393 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||||| ||| | ||| ||||| || || |
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| T |
28068162 |
agttgaatgcaatcacatgtgtcggtctcagacacaaacacgtgttagacaccagacacaccttagatcaaaaaaagtgtg--agccctacagagttatt |
28068065 |
T |
|
| Q |
394 |
atgaacacattgactaacccataaattatactat--------atgctattataagctcaaatccattttgttaat |
460 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
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|
| T |
28068064 |
atgaacacgttgactaacccataaattatactatagtataggatactattataagctcaagtccattttgttaat |
28067990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 27991919 - 27991873
Alignment:
| Q |
515 |
aaatttacactaaaatgcaaagcaactaaaatcaatgtttacatgaa |
561 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
27991919 |
aaatttacactaagatgcaaagcaaataaaatcaatgtttacatgaa |
27991873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 28078452 - 28078406
Alignment:
| Q |
515 |
aaatttacactaaaatgcaaagcaactaaaatcaatgtttacatgaa |
561 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
28078452 |
aaatttacactaagatgcaaagcaaataaaatcaatgtttacatgaa |
28078406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 586
Target Start/End: Complemental strand, 27981440 - 27981397
Alignment:
| Q |
543 |
aaatcaatgtttacatgaagcatgaacctagatagcaagttgat |
586 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || |||||||| |
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|
| T |
27981440 |
aaatgaatgtttacatgaagcatgaacctagaaagtaagttgat |
27981397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 586
Target Start/End: Complemental strand, 28067970 - 28067927
Alignment:
| Q |
543 |
aaatcaatgtttacatgaagcatgaacctagatagcaagttgat |
586 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || |||||||| |
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|
| T |
28067970 |
aaatgaatgtttacatgaagcatgaacctagaaagtaagttgat |
28067927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 1745186 - 1745228
Alignment:
| Q |
288 |
aaatggaataattgaatgcaatcacatgtgttggtctcagaca |
330 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||||||| |
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|
| T |
1745186 |
aaatggcataattgaatggaatcacatgtgttggtgtcagaca |
1745228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 27931891 - 27931831
Alignment:
| Q |
297 |
aattgaatgcaatcacatgtgttggtctcagacattgacacttgttaaacaccagacacac |
357 |
Q |
| |
|
||||||||| ||||||||||| |||| || ||||| ||||| ||||| ||| ||||||||| |
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| T |
27931891 |
aattgaatgtaatcacatgtgctggtttcggacatagacacgtgttagacatcagacacac |
27931831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 19161121 - 19161069
Alignment:
| Q |
311 |
acatgtgttggtctcagacattgacacttgttaaacaccagacacaccttcaa |
363 |
Q |
| |
|
|||||||||||| || || | |||||| || |||||||||||||||||||||| |
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|
| T |
19161121 |
acatgtgttggtgtccgatactgacacatgctaaacaccagacacaccttcaa |
19161069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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