View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_23 (Length: 318)

Name: NF18384_low_23
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_23
NF18384_low_23
[»] chr8 (1 HSPs)
chr8 (1-296)||(21237048-21237343)
[»] chr6 (2 HSPs)
chr6 (4-213)||(17344576-17344782)
chr6 (1-171)||(1029823-1029991)
[»] chr4 (3 HSPs)
chr4 (42-223)||(29827387-29827566)
chr4 (1-198)||(19192623-19192817)
chr4 (1-155)||(55150369-55150521)
[»] chr5 (2 HSPs)
chr5 (223-293)||(34900494-34900564)
chr5 (45-290)||(7881996-7882238)
[»] chr7 (1 HSPs)
chr7 (137-290)||(2941991-2942144)
[»] chr3 (1 HSPs)
chr3 (1-104)||(1019155-1019260)
[»] chr1 (1 HSPs)
chr1 (220-293)||(7003694-7003767)
[»] scaffold0445 (1 HSPs)
scaffold0445 (194-289)||(11060-11155)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 21237343 - 21237048
Alignment:
Q  1 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237343 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttg 21237244  T
Q  101 caatcccaagttgtatatagcacaaagttccgccaagagtgcatcaccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccacga 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21237243 caatcccaagttgtatatagcacgaagttccgccaagagtgcatcaccaccatttgtaaaatgagtaaacctcggtatccagttcccatcatggccacga 21237144  T
Q  201 agaactctaccagcgcctagacgaaaactatcttcaagaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttccaatgcttt 296  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237143 agaactccaccagcgcctagacgaaaactatcttcaagaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttccaatgcttt 21237048  T

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Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 17344782 - 17344576
Alignment:
Q  4 tgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttgcaa 103  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||   ||||  | ||||||||||||||    
T  17344782 tgcaaacttacatttgtcatattgagaataaggtctatcgcttctaaacaattactctcgcaaatgaagtttgtacaaccgatgtcataacaagttgcaa 17344683  T
Q  104 tcccaagttgtatatagcacaaagttccgccaagagtgcatcaccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccacgaaga 203  Q
     |||||||||   ||||||  |||||||| ||| |||||||||||| |||||| ||| |||||||||| || ||||||||||||||||||||||||| ||    
T  17344682 -cccaagttg--aatagcatgaagttccgtcaaaagtgcatcaccatcatttgcaaagtgagtgaaccccgctatccagttcccatcatggccacgatga 17344586  T
Q  204 actctaccag 213  Q
    |||| |||||    
T  17344585 actccaccag 17344576  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1029823 - 1029991
Alignment:
Q  1 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttg 100  Q
    |||||||||||||||||||| | ||| |  | ||||| || |||||| ||| |||||||||| ||||| |||||| ||| |||||| | ||||||||||     
T  1029823 acatgcaaacttacatttgtaatattgaatacaaggtttagcgcttccaaataatcactctcacaaataaagtgtatatagccgagatcataacaagtta 1029922  T
Q  101 caatcccaagttgtatatagcacaaagttccgccaagagtgcatcaccaccatttgtaaaatgagtgaacc 171  Q
    |||||  || |||   |||||||||||||| ||||| |||||||||||| |||||  |||| |||||||||    
T  1029923 caatcttaaattg--aatagcacaaagttctgccaaaagtgcatcaccatcatttacaaaaagagtgaacc 1029991  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 29827566 - 29827387
Alignment:
Q  42 cgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttgcaatcccaagttgtatatagcacaaagttccgccaagagtg 141  Q
    ||||||||||||||||||||| ||||||| |  || ||  || || | ||||||||| |||||||||||||| |||  |||| ||||||||||| |||||    
T  29827566 cgcttctaaacaatcactctcacaaatgatgcttgcatatccaagatcataacaagtagcaatcccaagttgaata--gcacgaagttccgccatgagtg 29827469  T
Q  142 catcaccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccacgaagaactctaccagcgcctagacg 223  Q
    ||||||| ||||||  ||| |||||||| |  | | ||||| | |||||||||||||||| ||||| |||||| ||||||||    
T  29827468 catcaccgccattttcaaagtgagtgaatcatgttgtccagctaccatcatggccacgaacaactccaccagctcctagacg 29827387  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19192623 - 19192817
Alignment:
Q  1 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttg 100  Q
    |||||||||||| |||||   | |||| ||||||| | || ||||| |||||| ||||| || ||||||| || ||||  | |||| | ||||||||||     
T  19192623 acatgcaaacttgcattttccaaattacgaataagttttaccgcttttaaacagtcactttcacaaatgatgtttgtaaagtcgagatcataacaagtt- 19192721  T
Q  101 caatcccaagttgtatatagcacaaagttccgccaagagtgcatcaccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccac 198  Q
    ||||||||||||| |||  ||||| |||||||||||||||||||  |||||||||  ||| | ||||||||| | ||||||| | |||||||||||||    
T  19192722 caatcccaagttgaata--gcacagagttccgccaagagtgcattgccaccattttcaaagtaagtgaaccttgttatccagctaccatcatggccac 19192817  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 55150521 - 55150369
Alignment:
Q  1 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttg 100  Q
    |||||||||||| ||||| | | |||  ||||||| |  | ||||||||||||||||||||| ||||||| |  |||||  || || | ||||||||| |    
T  55150521 acatgcaaacttgcatttttcatattgtgaataagattcaccgcttctaaacaatcactctcacaaatgatgcttgtatatccaagatcataacaagtag 55150422  T
Q  101 caatcccaagttgtatatagcacaaagttccgccaagagtgcatcaccaccattt 155  Q
    |||||||||||||   ||||| |||||||||| |  |||||||||||| ||||||    
T  55150421 caatcccaagttg--aatagcgcaaagttccgtcgtgagtgcatcaccgccattt 55150369  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 34900494 - 34900564
Alignment:
Q  223 gaaaactatcttcaagaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttccaatgc 293  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  34900494 gaaaaccatcttcaagaaaactgccatccacattgagtttaatgagaccctcatgaggtggtttccaatgc 34900564  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 290
Target Start/End: Original strand, 7881996 - 7882238
Alignment:
Q  45 ttctaaacaatcactctcgcaaatgaagtgtgtattgccgagcttataacaagttgcaatcccaagttgtatatagcacaaagttccgccaagagtgcat 144  Q
    |||||||||||||||||| ||||| | |  |||||  || || | ||| ||||| |||||||||||||  | ||||| | |||||| ||||||| |||||    
T  7881996 ttctaaacaatcactctcacaaataatgcttgtataaccaagatcatatcaagtagcaatcccaagtt--aaatagc-cgaagttctgccaagattgcat 7882092  T
Q  145 caccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccacgaagaactctaccagcgcctagacgaaaactatcttcaagaaaact 244  Q
    |||  |||||| |||| ||||||||||  | ||| ||  | | |||||||||||||| |||||||||| | ||||||||  |  | |||||||||||  |    
T  7882093 cactgccatttttaaagtgagtgaaccctgctattcaactactatcatggccacgaacaactctaccaactcctagacgggagatgtcttcaagaaagtt 7882192  T
Q  245 tccatccacattgagtttgatgagaccctcaggaggtggtttccaa 290  Q
      | |||||||| | |||||||||||||| | ||||||||||||||    
T  7882193 gtcttccacattaattttgatgagacccttatgaggtggtttccaa 7882238  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 290
Target Start/End: Original strand, 2941991 - 2942144
Alignment:
Q  137 gagtgcatcaccaccatttgtaaaatgagtgaacctcggtatccagttcccatcatggccacgaagaactctaccagcgcctagacgaaaactatcttca 236  Q
    |||||||||||  ||||||  ||| ||||||||||| | |||| ||   ||||||||||||| || ||||| |||||| ||||||||  | || ||||||    
T  2941991 gagtgcatcactgccattttcaaagtgagtgaaccttgctatctagacaccatcatggccacaaataactccaccagctcctagacgggagctgtcttca 2942090  T
Q  237 agaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttccaa 290  Q
    ||||| ||  |||||||||| | |||||| |||||||| |||||||||||||||    
T  2942091 agaaagctgtcatccacattaattttgataagaccctcgggaggtggtttccaa 2942144  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1019260 - 1019155
Alignment:
Q  1 acatgcaaacttacatttgttacattaagaataaggtctatcgcttctaaacaatcac--tctcgcaaatgaagtgtgtattgccgagcttataacaagt 98  Q
    |||||||||||||||||| | | ||| |||||||||| || |||||| || |||||||  ||||||| ||||||| ||||| |||||| | |||||||||    
T  1019260 acatgcaaacttacatttatcatattgagaataaggtataccgcttccaagcaatcacactctcgcagatgaagtttgtatagccgagatcataacaagt 1019161  T
Q  99 tgcaat 104  Q
    ||||||    
T  1019160 tgcaat 1019155  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 7003767 - 7003694
Alignment:
Q  220 gacgaaaactatcttcaagaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttccaatgc 293  Q
    ||||| |||| |||||||||||| |  |||||||||| ||||| ||| |||||||||||| |||||| ||||||    
T  7003767 gacgagaactttcttcaagaaaattgtcatccacatttagtttaatgtgaccctcaggagttggttttcaatgc 7003694  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 11060 - 11155
Alignment:
Q  194 gccacgaagaactctaccagcgcctagacgaaaactatcttcaagaaaacttccatccacattgagtttgatgagaccctcaggaggtggtttcca 289  Q
    |||||||| ||||| |||||| ||||||||  | || |||||||||||  |  |||||| ||| | |||||||||||| || ||||||||||||||    
T  11060 gccacgaataactccaccagctcctagacgggagctgtcttcaagaaagttgtcatccatattaattttgatgagaccttcgggaggtggtttcca 11155  T

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