View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_3 (Length: 586)
Name: NF18384_low_3
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Complemental strand, 45083319 - 45082760
Alignment:
| Q |
16 |
ttaatgttatattaaaatttgatctattgaaatttgttcataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaag |
115 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
45083319 |
ttaatgttatattaaaatttgatctattgaattttctacataaggtaacaatgggacaattgatggacaaggatctacttggtgggacaagttccaaaag |
45083220 |
T |
|
| Q |
116 |
ggtcaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttg |
215 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45083219 |
aaacaattgaaaatcactaggccatatatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttggtcaattccccttcttggtttg |
45083120 |
T |
|
| Q |
216 |
tccatccaatttacagcaggtttgatgagtcgccattttcaaatttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttct |
315 |
Q |
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| |||||| |||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45083119 |
tacatccagtttacagcaggtttgacgagtcacaatttttaaatttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttct |
45083020 |
T |
|
| Q |
316 |
gattaaactttatatcttcagtaacataattataaacggacttacaattcttgcaccagtggacgttccaaacacagatggcatagacccaggtaa--tg |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45083019 |
gattaaactttatatcttcagtaacataattataaacggacttacaattcttgcaccagtggacgttccaaacacagatggcatagacccaggtaatgtg |
45082920 |
T |
|
| Q |
414 |
tatatatgaaccaactctatggaacttatggcattcatattcatattgaataaaaggttcaataaaaaggactaaaataataactacttgttttaccact |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45082919 |
tatatatgaaccaactctatggaacttatggcattcatattcatattgaataaaaggttcaataacaaggactaaaataataactacttgttttcccact |
45082820 |
T |
|
| Q |
514 |
ctttcttttatacagattcatctacaaatgttctgattgaagacaactacattgtctctg |
573 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45082819 |
ctttctttcatacagattcatctacaaatgttctgattgaagacaactacattgtttctg |
45082760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 22 - 411
Target Start/End: Complemental strand, 45075883 - 45075500
Alignment:
| Q |
22 |
ttatattaaaatttgatctattgaaatttgttcataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaa |
121 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |
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| T |
45075883 |
ttatattaaaatttgatctattgaattttgttcataaggtaacaatgggacaattgatggacaaggatcttattggtgggacaagttccacaagggacaa |
45075784 |
T |
|
| Q |
122 |
atgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatc |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |
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| T |
45075783 |
atgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtccatc |
45075684 |
T |
|
| Q |
222 |
caatttacagcaggtttgatgagtcgccattttcaaatttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttctgattaa |
321 |
Q |
| |
|
|| ||||||||||||||||| |||| |||| ||||||||| ||||| |||| ||||| || || | | ||||||| ||| ||||| ||| |
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| T |
45075683 |
cagtttacagcaggtttgattagtcaccatcttcaaatttttcaaccttat-----------ttttc--taagtatatattatttcgttcatctgactaa |
45075597 |
T |
|
| Q |
322 |
actttata-------tcttcagtaacataattataaacggacttacaattcttgcaccagtggacgttccaaacacagatggcatagacccaggtaa |
411 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||| |
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| T |
45075596 |
actttatatcttcattcttcagtaacataattataaatggacttacaattcttgcaccagtcgacattcctaacacggatggcatagacccaggtaa |
45075500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 45068262 - 45068021
Alignment:
| Q |
26 |
attaaaatttgatctattgaaatttgttcataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatga |
125 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||| |
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| T |
45068262 |
attaaaatttgatctattgaattttctacataaggtaacaatgggacaattgatggacaaggatctacttggtgggacaagttccaaaagaaacaattga |
45068163 |
T |
|
| Q |
126 |
aaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaat |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||| |
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| T |
45068162 |
aaatcactaggccatatatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttgatcaactctcctaattggtttgtccatccaat |
45068063 |
T |
|
| Q |
226 |
ttacagcaggtttgatgagtcgccattttcaaatttctcaac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45068062 |
ttacagcaggtttgatgagtcgccattttcaaatttctcaac |
45068021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 45078958 - 45078769
Alignment:
| Q |
52 |
ttcataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgag |
151 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| ||| ||| | ||||||| ||||||||||||||| |
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| T |
45078958 |
ttcaaaaggtgacaatgggacaattgatggacaaggatcatattggtgggacaaattccacaagaaacaattgacactcactagaccatacatgattgag |
45078859 |
T |
|
| Q |
152 |
attatgtattctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||| |||||||||||||||||||||||| |
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| T |
45078858 |
attatgtattctgatcaaatccaaatatcaaatctcactttgatcaactctccaacatggtttgttcatccaatttacagcaggtttgat |
45078769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 301 - 416
Target Start/End: Complemental strand, 45068012 - 45067897
Alignment:
| Q |
301 |
ttatttcattcttctgattaaactttatatcttcagtaacataattataaacggacttacaattcttgcaccagtggacgttccaaacacagatggcata |
400 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45068012 |
ttattttattcatctgactaaactttatatcttcagtaacataattataaatagacttactattcttgcaccagtggacgttccaaacacagatggcata |
45067913 |
T |
|
| Q |
401 |
gacccaggtaatgtat |
416 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
45067912 |
gaccctggtaatgtat |
45067897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 309 - 410
Target Start/End: Complemental strand, 45078721 - 45078620
Alignment:
| Q |
309 |
ttcttctgattaaactttatatcttcagtaacataattataaacggacttacaattcttgcaccagtggacgttccaaacacagatggcatagacccagg |
408 |
Q |
| |
|
|||||||||| || ||| || ||| |||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||| ||| ||||||| |
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|
| T |
45078721 |
ttcttctgatcaagcttcatttctgcagtaacataattataaatggacttaccattcttgcaccagtagactctccaaacacagatggaataaacccagg |
45078622 |
T |
|
| Q |
409 |
ta |
410 |
Q |
| |
|
|| |
|
|
| T |
45078621 |
ta |
45078620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Complemental strand, 45067711 - 45067674
Alignment:
| Q |
536 |
tacaaatgttctgattgaagacaactacattgtctctg |
573 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
45067711 |
tacaaacgttctaattgaagacaactacattgtctctg |
45067674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 55 - 412
Target Start/End: Complemental strand, 34505652 - 34505293
Alignment:
| Q |
55 |
ataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagatt |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||| || || ||| |||||||||||||||||||||||||||||||| |
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|
| T |
34505652 |
ataaggtaacaacgggacaattgatggacaaggatcatattggtgggacaagtttcataataaacaattgaaaatcactaggccatacatgattgagatt |
34505553 |
T |
|
| Q |
155 |
atgtattctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgatgagtcgccatttt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | | ||||||| |
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|
| T |
34505552 |
ttgtattctgatcaaatccaaatatcaaatctcactttgatcaattccccttcttggtttgtccatccaacttacagcaggtttgataatgcaccatttt |
34505453 |
T |
|
| Q |
255 |
caa-atttctcaactttatttaaagcatta-ttttctatatgtgtgtgttatttcattcttctgattaaactttatatcttcagtaacataattataaac |
352 |
Q |
| |
|
||| ||||||||| | | | |||| |||||| ||| | |||||||||||| |||| || |||||| |||||||||||||||||||||| |
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|
| T |
34505452 |
caatttttctcaacctcaatatctttattatttttctttatacatacaatatttcattcttttgatcaagctttatttcttcagtaacataattataaag |
34505353 |
T |
|
| Q |
353 |
ggacttacaattcttgcaccagtggacgttccaaacacagatggcatagacccaggtaat |
412 |
Q |
| |
|
|| ||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
34505352 |
ggtcttaccattcttgcaccagtagactctccaaacacagatggaatagacccaggtaat |
34505293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 573
Target Start/End: Complemental strand, 34505057 - 34505009
Alignment:
| Q |
525 |
acagattcatctacaaatgttctgattgaagacaactacattgtctctg |
573 |
Q |
| |
|
|||||||||||||| || ||| ||| |||||||||||||||||||||| |
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|
| T |
34505057 |
acagattcatctacgaacgttaggatcgaagacaactacattgtctctg |
34505009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 17588071 - 17587920
Alignment:
| Q |
64 |
caatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagattatgtattct |
163 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| | ||||||||||| | | || ||||| |||| ||||||||| ||||||||||||||| ||| |
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|
| T |
17588071 |
caatggaacaattgatggtcaaggttcttattggtggaacaagttccacaaagatgaattgaaactcaccaggccatacttgattgagattatgttctct |
17587972 |
T |
|
| Q |
164 |
gatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttg |
215 |
Q |
| |
|
| |||| |||||||||||||| |||||| | ||||| || | |||||||| |
|
|
| T |
17587971 |
aacaaaattcaaatatcaaatcttactttgtttaattctccatcttggtttg |
17587920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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