View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_31 (Length: 253)
Name: NF18384_low_31
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 44636557 - 44636601
Alignment:
| Q |
128 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttct |
172 |
Q |
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| T |
44636557 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttct |
44636601 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 44636649 - 44636685
Alignment:
| Q |
217 |
actgtcgctgtcgtcatcataatgtatgtggttggtt |
253 |
Q |
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| T |
44636649 |
actgtcgctgtcgtcatcataatgtatgtggttggtt |
44636685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 44636460 - 44636493
Alignment:
| Q |
31 |
gagtcgtaatatttgtttttctagtagcatgcta |
64 |
Q |
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| T |
44636460 |
gagtcgtaatatttgtttttctagtagcatgcta |
44636493 |
T |
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