View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_33 (Length: 223)

Name: NF18384_low_33
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_33
NF18384_low_33
[»] chr6 (12 HSPs)
chr6 (1-223)||(11132561-11132783)
chr6 (1-223)||(11196290-11196512)
chr6 (9-223)||(11160712-11160926)
chr6 (9-223)||(11241802-11242016)
chr6 (65-223)||(11155901-11156059)
chr6 (65-223)||(11199344-11199502)
chr6 (159-223)||(11170295-11170359)
chr6 (159-223)||(11209117-11209181)
chr6 (61-149)||(11275566-11275654)
chr6 (92-151)||(11209035-11209094)
chr6 (188-223)||(11315112-11315147)
chr6 (185-223)||(11275705-11275743)
[»] chr7 (1 HSPs)
chr7 (98-168)||(39985310-39985380)
[»] chr2 (2 HSPs)
chr2 (101-221)||(17648422-17648542)
chr2 (101-168)||(17706146-17706213)
[»] scaffold1207 (1 HSPs)
scaffold1207 (185-223)||(639-677)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11132561 - 11132783
Alignment:
Q  1 cccatgtttctccaatccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132561 cccatgtttctccaatccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggaca 11132660  T
Q  101 gcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11132661 gcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcg 11132760  T
Q  201 tagagccgccaacaagcacaaca 223  Q
    |||| ||||||||||| ||||||    
T  11132761 tagacccgccaacaaggacaaca 11132783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11196290 - 11196512
Alignment:
Q  1 cccatgtttctccaatccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||  | || | ||| |   |||||| |||||||| |||||| ||||||| || |||||||||    
T  11196290 cccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggaca 11196389  T
Q  101 gcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcg 200  Q
    ||||| ||| |||| |  || |||||  |||| ||||||||||||||   ||| ||  | |||||||||||||  |||||||| |||||||||||||| |    
T  11196390 gcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctag 11196489  T
Q  201 tagagccgccaacaagcacaaca 223  Q
    |||||||||||||||| ||||||    
T  11196490 tagagccgccaacaaggacaaca 11196512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 11160712 - 11160926
Alignment:
Q  9 tctccaatccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggacagcagcacc 108  Q
    |||||||||||||||| |||||||||||||||  | || | ||| |   |||||| ||||||   |||||| ||||||| || |||||||||||||| ||    
T  11160712 tctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgcc 11160811  T
Q  109 acatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcgtagagccg 208  Q
    | |||| |  || |||||  |||| ||||||||||||||   ||| ||  | |||||||||||||  |||||||| |||||||||||||| ||||||||     
T  11160812 atatgccactgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagcca 11160911  T
Q  209 ccaacaagcacaaca 223  Q
    |||||||| ||||||    
T  11160912 ccaacaaggacaaca 11160926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 11242016 - 11241802
Alignment:
Q  9 tctccaatccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggacagcagcacc 108  Q
    |||||||||||||||| |||| ||||||||||  | || | ||| |   |||||| |||||||| |||||| ||||||| || ||||||||| |||| ||    
T  11242016 tctccaatccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgcc 11241917  T
Q  109 acatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcgtagagccg 208  Q
    | |||| | ||| |||||  |||| ||||||||||||||   ||| ||  | |||||||||||||  |||||||| ||||||||||||||  |||||||     
T  11241916 atatgccacagcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagcca 11241817  T
Q  209 ccaacaagcacaaca 223  Q
    |||||||| ||||||    
T  11241816 ccaacaaggacaaca 11241802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 11155901 - 11156059
Alignment:
Q  65 tcactaaaatcaccattcaatattgatgcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaaga 164  Q
    |||||| | |||||| ||||||| || |||||||||||||| ||| |||| |  || |||||  |||| ||||||||||||||   ||| ||  | ||||    
T  11155901 tcactacactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaaga 11156000  T
Q  165 aatcactcaatatttgttgtacttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    |||||||||  |||||||| |||||||||||||| |||||||| |||||||| ||||||    
T  11156001 aatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaaca 11156059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 11199344 - 11199502
Alignment:
Q  65 tcactaaaatcaccattcaatattgatgcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaaga 164  Q
    |||||| | |||||| ||||||| || |||||||||||||| ||| |||| |  || |||||  |||| ||||||||||||||   ||| ||  | ||||    
T  11199344 tcactacactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaaga 11199443  T
Q  165 aatcactcaatatttgttgtacttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    |||||||||  |||||||| |||||||||||||| |||||||| |||||||| ||||||    
T  11199444 aatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaaca 11199502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 11170295 - 11170359
Alignment:
Q  159 caaagaaatcactcaatatttgttgtacttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    ||||||||||| ||||   |||||| |||||||||||||| ||||||||||||||||||||||||    
T  11170295 caaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaaca 11170359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 11209117 - 11209181
Alignment:
Q  159 caaagaaatcactcaatatttgttgtacttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||||||||||    
T  11209117 caaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaaca 11209181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 11275566 - 11275654
Alignment:
Q  61 cttttcactaaaatcaccattcaatattgatgcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataact 149  Q
    |||||||| ||  |||||| |||||||  | ||||||| |||||| ||| ||||||  || ||||||||||| ||||||||||||||||    
T  11275566 cttttcacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataact 11275654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 11209035 - 11209094
Alignment:
Q  92 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 151  Q
    |||||||||||||| ||| ||||||  || ||||||||||| |||||||| |||||||||    
T  11209035 gcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactcc 11209094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 11315147 - 11315112
Alignment:
Q  188 tttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaaca 11315112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 11275705 - 11275743
Alignment:
Q  185 acttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11275705 acttttacaatcctggtagacccgccaacaagcacaaca 11275743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 39985310 - 39985380
Alignment:
Q  98 acagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatc 168  Q
    |||||||||||| |||||| ||| ||||| | ||||||||| ||||||| ||||||||| | |||||||||    
T  39985310 acagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcctttccgttaaagaaatc 39985380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 17648542 - 17648422
Alignment:
Q  101 gcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcg 200  Q
    ||||||||| |||||| ||| ||||| | ||| ||||| ||||||| ||||||||| |||||||||||   ||||| |||||| || |||  ||| || |    
T  17648542 gcagcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttg 17648443  T
Q  201 tagagccgccaacaagcacaa 221  Q
    |||| ||||| ||||| ||||    
T  17648442 tagaaccgcctacaaggacaa 17648422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 17706213 - 17706146
Alignment:
Q  101 gcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcctttccttcaaagaaatc 168  Q
    ||||||||| |||||| ||| ||||| | ||| ||||| ||||||| ||||||||| |||||||||||    
T  17706213 gcagcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatc 17706146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 639 - 677
Alignment:
Q  185 acttttacaatcctcgtagagccgccaacaagcacaaca 223  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  639 acttttacaatccttgtagagccgccaacaaggacaaca 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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