View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_5 (Length: 568)

Name: NF18384_low_5
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_5
NF18384_low_5
[»] chr5 (9 HSPs)
chr5 (11-267)||(35141878-35142134)
chr5 (304-551)||(35142489-35142736)
chr5 (306-550)||(37165136-37165379)
chr5 (304-551)||(37139770-37140016)
chr5 (304-551)||(37132684-37132930)
chr5 (437-536)||(38749356-38749454)
chr5 (153-229)||(37165772-37165847)
chr5 (197-234)||(37140451-37140488)
chr5 (190-234)||(37140172-37140216)
[»] chr4 (5 HSPs)
chr4 (306-492)||(3022212-3022398)
chr4 (132-240)||(3021943-3022050)
chr4 (56-123)||(3021851-3021919)
chr4 (135-229)||(29722975-29723066)
chr4 (437-491)||(11242391-11242445)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 35141878 - 35142134
Alignment:
Q  11 catcatcatggtatccaatgattagtttatagaacatgtttacagaataacagtattagtagtgtctcacaacatatacttcacaaactgattatttaaa 110  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35141878 catcattatggtatccaatgattagtttctagaacatgtttacagaataacagtattagtagtgtctcacaacatatacttcacaaactgattatttaaa 35141977  T
Q  111 ttattgatacatatgagagaactctgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagaca 210  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35141978 ttattgatacatatcagagaactttgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagaca 35142077  T
Q  211 aacttttcctgtggaaagtacaaagtgatccaagtacacgcttcagtttgagtgaag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35142078 aacttttcctgtggaaagtacaaagtgatccaagtacacgcttcagtttgagtgaag 35142134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 304 - 551
Target Start/End: Original strand, 35142489 - 35142736
Alignment:
Q  304 ggttaccagcaagcctctaagccacttttgaaatttagttgcattcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatat 403  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35142489 ggttaccagcaagcctctaagccacttttgaaatttagttgccttcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatat 35142588  T
Q  404 gcatgtctccaattccggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatct 503  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  35142589 gcatgtctccaattctggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggtttttttatct 35142688  T
Q  504 tcttgactactttgttcatgtgtttctggtttcagatgtgcaacttct 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35142689 tcttgactactttgttcatgtgtttctggtttcagatgtgcaacttct 35142736  T

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Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 306 - 550
Target Start/End: Complemental strand, 37165379 - 37165136
Alignment:
Q  306 ttaccagcaagcctctaagccacttttgaaatttagttgcattcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatatgc 405  Q
    ||||||| ||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||     
T  37165379 ttaccagaaagcctctaagccgcctttgaaatttatttacattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacaggacatatgt 37165280  T
Q  406 atgtctccaattccggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttc 505  Q
    |||||||||||| ||||  |||||||| || ||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||       ||||||    
T  37165279 atgtctccaattacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattgg-ctttttatcttc 37165181  T
Q  506 ttgactactttgttcatgtgtttctggtttcagatgtgcaacttc 550  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||    
T  37165180 ttgactactttcttcatgtgtttctggtttctgaggtgcaacttc 37165136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 304 - 551
Target Start/End: Complemental strand, 37140016 - 37139770
Alignment:
Q  304 ggttaccagcaagcctctaagccacttttgaaatttagttgcattcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatat 403  Q
    |||||||||||| ||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  37140016 ggttaccagcaatcctctcagccacatttgaaattcaattgcattcagcaccataaacacatacactgtgtcaattatgtagttcaaaaacaagacatat 37139917  T
Q  404 gcatgtctccaattccggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatct 503  Q
    |||||||||||||| ||||  |||||||| || ||||| || ||| ||||||| || ||||||||||||| ||||  ||||||||||||       ||||    
T  37139916 gcatgtctccaatttcggctaagaaacaatgatccccataggccccaaaatccagtcataaatcccaatgtcacacacaaataaattgg-ttttttatct 37139818  T
Q  504 tcttgactactttgttcatgtgtttctggtttcagatgtgcaacttct 551  Q
    |||||||| |||| ||||||||||||||||||  ||||||||||||||    
T  37139817 tcttgacttctttcttcatgtgtttctggtttatgatgtgcaacttct 37139770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 304 - 551
Target Start/End: Complemental strand, 37132930 - 37132684
Alignment:
Q  304 ggttaccagcaagcctctaagccacttttgaaatttagttgcattcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatat 403  Q
    |||| ||||||| ||||| |||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  37132930 ggtttccagcaatcctctcagccacatttgaaattcagtggcattcagcacgataaacacatacactgtgtcaactatgtagttcaaaaacaagacatat 37132831  T
Q  404 gcatgtctccaattccggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatct 503  Q
    | |||||||||| | ||||  |||||||| || ||||| || ||| |||||||||||||||||||||||| |||  |||||||||||||       ||||    
T  37132830 gtatgtctccaagtacggctaagaaacaatgatccccataggccccaaaatcctgtgataaatcccaatgtcacgctcaaataaattgg-ctttttatct 37132732  T
Q  504 tcttgactactttgttcatgtgtttctggtttcagatgtgcaacttct 551  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  37132731 tcttgactactttcttcatgtgtttctggtttatgatgtgcaacttct 37132684  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 38749454 - 38749356
Alignment:
Q  437 ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc 536  Q
    ||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||       ||||||| ||||||||| |||  ||||||||||||||    
T  38749454 ccccatagtccccaaaatcctgtgataaatcccgatgccacactcaaataaattgg-ttttttatcttctggactactttcttctggtgtttctggtttc 38749356  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 37165847 - 37165772
Alignment:
Q  153 gttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagt 229  Q
    ||||||||||| ||||||||  |||||| || ||||| | |||||||||| ||| ||||||||||||||||||||||    
T  37165847 gttctgctacccttcttcaac-aaagttgcacatggtgctattggagatgcttaaacaaacttttcctgtggaaagt 37165772  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 37140488 - 37140451
Alignment:
Q  197 gagatgtttagacaaacttttcctgtggaaagtacaaa 234  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  37140488 gagatgcttaaacaaacttttcctgtggaaagtacaaa 37140451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 37140216 - 37140172
Alignment:
Q  190 tcaattggagatgtttagacaaacttttcctgtggaaagtacaaa 234  Q
    ||||||||||||| |||  ||||||||||| ||||||||||||||    
T  37140216 tcaattggagatgcttaatcaaacttttccagtggaaagtacaaa 37140172  T

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Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 306 - 492
Target Start/End: Original strand, 3022212 - 3022398
Alignment:
Q  306 ttaccagcaagcctctaagccacttttgaaatttagttgcattcagcaccataaacacatacactgtgtcaaatatgttgttcaagaacaagacatatgc 405  Q
    |||||| |||||||||||||||  || |||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  3022212 ttaccaacaagcctctaagccatcttcgaaacttagttgcattcagcaccataaacacatacattgtgtcaattatgttgtccaagaacaagacatatgc 3022311  T
Q  406 atgtctccaattccggcagagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattgg 492  Q
    |||||||||| ||   || || |  || || ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3022312 atgtctccaagtcttccacagcagaaatgatccccatagtccccaaaatcctgtgataaatcccaatgccacactcaaataaattgg 3022398  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 3021943 - 3022050
Alignment:
Q  132 ctctgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagtac 231  Q
    |||| ||||||  |||||| ||||||  |||| ||||||||  |||||| ||||| |||| | |||||||| ||||||||||||||||||||||| ||||    
T  3021943 ctcttatcagaatagctacatgttctcttacccttcttcaac-aaagttgcaaatagttctactggagatgcttagacaaacttttcctgtggaatgtac 3022041  T
Q  232 aaagtgatc 240  Q
    |||||||||    
T  3022042 aaagtgatc 3022050  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 3021851 - 3021919
Alignment:
Q  56 aataacagtattagtagtgtctcacaacata-tacttcacaaactgattatttaaattattgatacata 123  Q
    ||||||||||||| ||||||||||||| ||| |  |||||||| | |||||||||||||||||||||||    
T  3021851 aataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacata 3021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 29722975 - 29723066
Alignment:
Q  135 tgatcagagcagctacttgttctgctacctttcttcaaataaagttacaaatggttcaattggagatgtttagacaaacttttcctgtggaaagt 229  Q
    ||||||||| ||||  ||||||||||||||||||||||  |||||| || ||||| | |||||||||| ||| ||||||||||||| || |||||    
T  29722975 tgatcagagaagct--ttgttctgctacctttcttcaac-aaagttgcacatggtgccattggagatgcttaaacaaacttttcctatgaaaagt 29723066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 11242391 - 11242445
Alignment:
Q  437 ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattg 491  Q
    |||||||| ||| |||||||||| |||||||| ||||||||| ||||||||||||    
T  11242391 ccccaaaggccccaaaatcctgtaataaatcctaatgccacactcaaataaattg 11242445  T

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