View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_6 (Length: 568)

Name: NF18384_low_6
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_6
NF18384_low_6
[»] chr6 (3 HSPs)
chr6 (1-308)||(10078087-10078394)
chr6 (481-551)||(10078802-10078872)
chr6 (195-232)||(9491848-9491885)
[»] chr7 (1 HSPs)
chr7 (194-232)||(4874959-4874997)
[»] chr3 (1 HSPs)
chr3 (195-233)||(19900223-19900261)
[»] chr8 (1 HSPs)
chr8 (195-232)||(12734037-12734074)
[»] chr5 (1 HSPs)
chr5 (195-232)||(6761461-6761498)
[»] chr4 (1 HSPs)
chr4 (196-232)||(39055157-39055193)
[»] chr1 (1 HSPs)
chr1 (197-233)||(42831641-42831677)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 10078087 - 10078394
Alignment:
Q  1 catatttaccctaaaatgcctttggtgcaaaatatcatgcttcaacattttatccacaagaaatttttgaacttaattaaaaatgagaataccataagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||    
T  10078087 catatttaccctaaaatgcctttggtgcaaaatatcatgcttcaacattttatccacaagagatttctgaacttacttaaatatgagaataccataagac 10078186  T
Q  101 cattctcaatgggatggtatcgcattttgaagacttggtacctattatatatccttattatggagaannnnnnnnggggtcttataagaccca-attttt 199  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||          ||||||||||||||||  |||||    
T  10078187 catcctcaatgggatggtatcacattttgaagacttggtacctattagatatccttattatggggaatttttttt-tggtcttataagacccagtttttt 10078285  T
Q  200 taatatttaaaatttaaaatgtaatgatataaaaatgatagttgaggtaccatccttaaatttgcatgagatgttgggttgaagggattatgtggttatt 299  Q
    ||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  10078286 taatattaaaaatttgaaatgtaatgatataaaattgataattgaggtaccatcctcaaatttgcatgagatgttggattgaagggattatgtggttatt 10078385  T
Q  300 agatactct 308  Q
    |||||||||    
T  10078386 agatactct 10078394  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 551
Target Start/End: Original strand, 10078802 - 10078872
Alignment:
Q  481 taatgcacatatgtcatattaatgcattattatttagttacaatatgtctgtggcaataatccttttaatt 551  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10078802 taatgcacatatgtcattttaatgcattattatttagttacaatatgcctgtgacaataatccttttaatt 10078872  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 9491885 - 9491848
Alignment:
Q  195 ttttttaatatttaaaatttaaaatgtaatgatataaa 232  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  9491885 ttttttaatattaaaaaattaaaatgtaatgatataaa 9491848  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 4874997 - 4874959
Alignment:
Q  194 attttttaatatttaaaatttaaaatgtaatgatataaa 232  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  4874997 attttttaatatttaaaaattaaaatgtaatgatataaa 4874959  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 19900261 - 19900223
Alignment:
Q  195 ttttttaatatttaaaatttaaaatgtaatgatataaaa 233  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  19900261 ttttttaatattaaaaaattaaaatgtaatgatataaaa 19900223  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 12734037 - 12734074
Alignment:
Q  195 ttttttaatatttaaaatttaaaatgtaatgatataaa 232  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  12734037 ttttttaatattaaaaaattaaaatgtaatgatataaa 12734074  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 6761498 - 6761461
Alignment:
Q  195 ttttttaatatttaaaatttaaaatgtaatgatataaa 232  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  6761498 ttttttaatattaaaaaattaaaatgtaatgatataaa 6761461  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 39055157 - 39055193
Alignment:
Q  196 tttttaatatttaaaatttaaaatgtaatgatataaa 232  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  39055157 tttttaatattaaaaaattaaaatgtaatgatataaa 39055193  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 42831641 - 42831677
Alignment:
Q  197 ttttaatatttaaaatttaaaatgtaatgatataaaa 233  Q
    |||||||||| |||| |||||||||||||||||||||    
T  42831641 ttttaatattaaaaaattaaaatgtaatgatataaaa 42831677  T

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