View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_7 (Length: 563)
Name: NF18384_low_7
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 43186018 - 43186548
Alignment:
| Q |
18 |
acctgtgaagagcacaagcctggcacttgttgcnnnnnnnctctaacctctggaaaacctacatcgcagagcggaaaatggttgctaactcaacatttct |
117 |
Q |
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| T |
43186018 |
acctgtgaagagcacaagcctggcacttgttgcaaaaaacctctaacctctggaaaacctacatcgcagagtggaaaatggttgctaagtcaacatttct |
43186117 |
T |
|
| Q |
118 |
tcagatgttatgaagctaaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataacc |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186118 |
tcagatgttatgaagctgaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataacc |
43186217 |
T |
|
| Q |
218 |
actgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagctat--acagctgctatttaacaacaatgatgataaaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
43186218 |
actgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagctatgtacagctgctatttaacaacaatgatgattacaa |
43186317 |
T |
|
| Q |
316 |
ctgataattttcttcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacggccact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43186318 |
ctgataattttcttcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacagccacc |
43186417 |
T |
|
| Q |
416 |
accgcggctactatcgtctattggcaacagatactcgatgtagcaaaccaattgtgtagccttctgcttgcatgctacccatccctcctaagctttgaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43186418 |
accgcggctactatcgtctattggcaacagatactcaatgtagcaaaccaatttggtagcctcctgcttgcatgctacccatccctcctaagctttgaca |
43186517 |
T |
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| Q |
516 |
acttcacactatgacaattaggccccacttg |
546 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43186518 |
acttcacactatgacaattaggccccacttg |
43186548 |
T |
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