View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18384_low_8 (Length: 524)

Name: NF18384_low_8
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18384_low_8
NF18384_low_8
[»] chr5 (5 HSPs)
chr5 (19-514)||(29712302-29712797)
chr5 (127-324)||(29696064-29696261)
chr5 (187-401)||(29688023-29688240)
chr5 (134-203)||(42562478-42562547)
chr5 (22-88)||(29687804-29687870)
[»] chr3 (1 HSPs)
chr3 (128-303)||(47451954-47452129)
[»] chr1 (3 HSPs)
chr1 (360-395)||(24340475-24340510)
chr1 (360-395)||(24352840-24352875)
chr1 (261-303)||(24310163-24310205)
[»] chr4 (6 HSPs)
chr4 (129-166)||(7771261-7771298)
chr4 (129-166)||(7904890-7904927)
chr4 (134-166)||(7774010-7774042)
chr4 (134-166)||(7789951-7789983)
chr4 (360-400)||(48852757-48852797)
chr4 (129-217)||(48875700-48875788)


Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 29712797 - 29712302
Alignment:
Q  19 aactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattttttgcttccacagtct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712797 aactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattttttgcttccacagtct 29712698  T
Q  119 tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712697 tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaat 29712598  T
Q  219 atataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtc 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712597 atataccaaattctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtc 29712498  T
Q  319 atatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712497 atatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttat 29712398  T
Q  419 tgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaacggggctattcactggttggctctttgtgatgat 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  29712397 tgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaatggggctattcactggttggctctttgttatgat 29712302  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 127 - 324
Target Start/End: Original strand, 29696064 - 29696261
Alignment:
Q  127 acttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatatacca 226  Q
    ||||||| ||||||||||||||||||| |||||||||||||  |||   ||| | |||||| |||||||||||||||| ||| ||||||||   |||||     
T  29696064 acttgattttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaatacct 29696163  T
Q  227 aactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatga 324  Q
        ||   ||||||| ||||  ||||||| || |||| |||||||||||||||||||||||||  ||||||||||| ||| |||| ||||| |||||    
T  29696164 tttactacaattgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 401
Target Start/End: Original strand, 29688023 - 29688240
Alignment:
Q  187 tctatggaatccatccactggagttcacaaatatataccaa--act-ctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgac 283  Q
    |||||||||||||||||| |||||||||| | | |||||    ||| || ||||||||| ||||||||| ||| |  |||| |||||||||||||||||     
T  29688023 tctatggaatccatccaccggagttcacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgat 29688122  T
Q  284 gagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgt 383  Q
    ||||| |  ||||||||| | || ||||| ||||  |||||||| | |||   || |  |||| ||| ||| |||||||||||||| |||||| || |||    
T  29688123 gagtctactgatgattacctggttctttcaatgtgctatgatccgagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgt 29688222  T
Q  384 ggaacgaaattgagggtg 401  Q
    |||| ||||| |||||||    
T  29688223 ggaaggaaatggagggtg 29688240  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 42562547 - 42562478
Alignment:
Q  134 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcca 203  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||  |||  ||||||||||||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatcca 42562478  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 29687804 - 29687870
Alignment:
Q  22 tccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattca 88  Q
    |||| |||| |||||||||||||| ||||| |||||||| ||  |||||||||||||||| ||||||    
T  29687804 tccagatcttgaatctctatctatagattttgaaacatcgcttcacgatgatagtgcttcttattca 29687870  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 47452129 - 47451954
Alignment:
Q  128 cttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatataccaa 227  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||  ||||    |||   ||||||||||||||||||||||||||||| | |||||      
T  47452129 cttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctt 47452030  T
Q  228 actctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattactt 303  Q
       ||| | ||| || |||| |||||||| || |||| ||| | |||||||||||||||| ||  |||||||||||    
T  47452029 tgcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagttaacagatgattactt 47451954  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 24340475 - 24340510
Alignment:
Q  360 ttttctcattgagagctgatgcgtggaacgaaattg 395  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24340475 ttttctcattgagagctaatgcgtggaacgaaattg 24340510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 24352840 - 24352875
Alignment:
Q  360 ttttctcattgagagctgatgcgtggaacgaaattg 395  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24352840 ttttctcattgagagctaatgcgtggaacgaaattg 24352875  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 24310163 - 24310205
Alignment:
Q  261 atttatatggttttgggtatgacgagtcaagggatgattactt 303  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  24310163 atttctatggttttggttatgacgagtcaagagatgattactt 24310205  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 7771261 - 7771298
Alignment:
Q  129 ttgatattaaaggttcgtgtagagggtttatacttttg 166  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771261 ttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 7904890 - 7904927
Alignment:
Q  129 ttgatattaaaggttcgtgtagagggtttatacttttg 166  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7904890 ttgaaattagaggttcgtgtagagggtttatacttttg 7904927  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 7774042 - 7774010
Alignment:
Q  134 attaaaggttcgtgtagagggtttatacttttg 166  Q
    |||| ||||||||||||||||||||||||||||    
T  7774042 attagaggttcgtgtagagggtttatacttttg 7774010  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 7789951 - 7789983
Alignment:
Q  134 attaaaggttcgtgtagagggtttatacttttg 166  Q
    |||| ||||||||||||||||||||||||||||    
T  7789951 attagaggttcgtgtagagggtttatacttttg 7789983  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 48852757 - 48852797
Alignment:
Q  360 ttttctcattgagagctgatgcgtggaacgaaattgagggt 400  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  48852757 ttttctcattgagagctaatgcatggaaagaaattgagggt 48852797  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 48875700 - 48875788
Alignment:
Q  129 ttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 217  Q
    |||| ||||||||||| || ||||| |||||||| |||  ||||  |||| | ||||  ||||||||||||||||| ||| ||||||||    
T  48875700 ttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaa 48875788  T

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